Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5614 86.0 5e-12 seq4595 86.0 5e-12 seq5649 82.4 6e-11 >seq5614 Length=3457230 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| |||||||||||||| || ||||| |||| || || ||||||| Sbjct 1200681 ACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCA 1200622 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | || | || |||||| || ||| | ||||| ||||| Sbjct 1200621 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1200562 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | |||||| || || || | ||| ||||| || Sbjct 1200561 ATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTCTTG 1200502 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || |||||||| |||||||| || ||||| || Sbjct 1200501 CCGGTTAAAGTCTTGACAAAGATCTGCATATT 1200470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| |||||||||||||| || ||||| |||| || || ||||||| Sbjct 1200909 ACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCA 1200850 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | || | || |||||| || ||| | ||||| ||||| Sbjct 1200849 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1200790 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | |||||| ||||| || | ||| ||||| || Sbjct 1200789 ATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTG 1200730 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| |||||||| || ||||| Sbjct 1200729 CCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 >seq4595 Length=987418 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || |||||||| || || ||||| || | || || ||||| Sbjct 268512 AAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTCC 268571 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || | || || | ||||||||| || | ||||| ||||| Sbjct 268572 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCC 268631 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| ||| || | ||| |||||| ||||| || | |||||||||| Sbjct 268632 TGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATGGTT 268691 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || || || || ||||| || |||||||| Sbjct 268692 TTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 268726 >seq5649 Length=2333656 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 || ||||||||| ||||| | || || | || || ||| || ||||| | | || Sbjct 452723 GATGTTGCCCAGGTCGCCCAGATGGCGATTCTCGTCGGTGGGTGCACCGTGCTCCT--TG 452780 Query 21198 C-GTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCG 21255 | ||| || ||||||||| |||| ||| |||| |||||| || |||| ||||||||| Sbjct 452781 CTGTACGGATTAAAGTGCGGCCCGGACGACATGCAACCGTTGGTGTTGTCTCCGAACTCG 452840 Query 21256 TGAACGTGAAAGCCGTGCAGTCC 21278 ||||| || || |||||||| || Sbjct 452841 TGAACATGGAATCCGTGCAGGCC 452863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414543727305076