Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq4499 152 2e-32 >seq4499 Length=1650 Score = 152 bits (168), Expect = 2e-32 Identities = 292/424 (69%), Gaps = 20/424 (5%) Strand=Plus/Minus Query 53059 GCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTT 53118 ||| ||||| | |||||||||||||| ||| ||||||||||| || |||||||| || Sbjct 526 GCTCTGGGTTTCGGATTTTACTTACGTTTCCACCTGGCAGGGCTTTGTGTATGTGGCCTT 467 Query 53119 CATCATTGATGTGTTTGCCGGATACATTGTGGGGTGGCGGGTCTCATC----GTCCATGG 53174 |||||||||||| |||||| | |||||||||||||| |||||||| | |||| Sbjct 466 CATCATTGATGTATTTGCCCGCGTGATTGTGGGGTGGCGTGTCTCATCAACGGCCCATAC 407 Query 53175 AGACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCGTCC---G 53231 ||| |||||||||||||| || |||||||| | || ||| | | | | || | Sbjct 406 CGAC----TTCGTGCTGGATGCCCTTGAGCAGGC--TCTGTGCCAG-AGGCAGCCCGAGG 354 Query 53232 GCACGGT---CCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGC 53288 ||| || ||| || |||| || | ||| ||||| || | |||||| || Sbjct 353 GCAAAGTGACCCACCATTCCGATAGGGGCTGTCAATATGTGTCCATTCGCTACACGCAAA 294 Query 53289 GGCTTAAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACG 53348 | || ||||| || | | || || || ||| || || || ||||| || | Sbjct 293 GACTGGCTGAAGCGGGCCTCGTTGCCTCTGTCGGCAGTGTTGGGGATTCCTATGATAATG 234 Query 53349 CGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACA-CCGTAAGAGC--T 53405 | | ||||||| ||| || || ||||||||| | || | || | | | ||| | | Sbjct 233 CCCTCGCGGAGACCATTAACGGACTTTACAAAACTGAACTCATCTATCGGCAAGGACCAT 174 Query 53406 GGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATC 53465 |||||||| | | | || |||||||| || || | ||||| ||||||| || |||| Sbjct 173 GGAAAAACAGAGACGCTGTTGAACTGGCAACGCTTAAATGGGTCGACTGGTTCAATAATC 114 Query 53466 GACG 53469 | || Sbjct 113 GCCG 110 Score = 125 bits (138), Expect = 3e-24 Identities = 286/421 (68%), Gaps = 22/421 (5%) Strand=Plus/Minus Query 50223 TGGGTGGCTGATTTTACCTGGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATC 50282 ||||| | |||||||| | || ||| ||||||||||| || |||||||| |||||| Sbjct 522 TGGGTTTCGGATTTTACTTACGTTTCCACCTGGCAGGGCTTTGTGTATGTGGCCTTCATC 463 Query 50283 ATTGATGTGTTCGCCGGATACATCGTGGGATGGCAGGTCTCATCA----TCCATGGAAAC 50338 |||||||| || ||| | || ||||| |||| ||||||||| |||| | | Sbjct 462 ATTGATGTATTTGCCCGCGTGATTGTGGGGTGGCGTGTCTCATCAACGGCCCAT---ACC 406 Query 50339 AACATTCGTGCTGGATGCACTGGAGCAGGCGTTGTGGGCCCGTCGGCCGTCC---GGCAC 50395 || |||||||||||||| || |||||||| |||| || ||| | || |||| Sbjct 405 GAC-TTCGTGCTGGATGCCCTTGAGCAGGCTCTGTG---CCAGAGGCAGCCCGAGGGCAA 350 Query 50396 A---ATCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGCT 50452 | | ||| || |||| || | ||| ||||| || | ||||||||| | || Sbjct 349 AGTGACCCACCATTCCGATAGGGGCTGTCAATATGTGTCCATTCGCTACACGCAAAGACT 290 Query 50453 TAAGGAAGCCGGATTACTGGCATCAACAGGGAGTACTGGCGACTCGTATGACAACGCGAT 50512 ||||| || | | || || || ||| ||| || || ||||| || || | Sbjct 289 GGCTGAAGCGGGCCTCGTTGCCTCTGTCGGCAGTGTTGGGGATTCCTATGATAATGCCCT 230 Query 50513 GGCTGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACA-CCGTAAGAGC--TGGAA 50569 || |||| ||| || || ||||||||| | || | || | | | ||| | ||||| Sbjct 229 CGCGGAGACCATTAACGGACTTTACAAAACTGAACTCATCTATCGGCAAGGACCATGGAA 170 Query 50570 AAACCG-GACAGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCGAC 50628 |||| | ||| | || |||||||| || || | ||||| ||||||| || ||||| | Sbjct 169 AAACAGAGAC-GCTGTTGAACTGGCAACGCTTAAATGGGTCGACTGGTTCAATAATCGCC 111 Query 50629 G 50629 | Sbjct 110 G 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185241741798416