Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5380 159 8e-34 seq4595 132 1e-25 seq5446 125 2e-23 seq4758 105 2e-17 >seq5380 Length=870010 Score = 159 bits (176), Expect = 8e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || |||||||| ||||| ||||| || || | ||| ||||| || || Sbjct 656784 TGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCATCTTCCAGCTGC 656725 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 656724 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 656665 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 656664 GCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTG 656605 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || || || |||||||| |||| Sbjct 656604 AGGGTCTTAACGAAGATCTGCATCTTGT 656577 >seq4595 Length=987418 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || | ||| | |||||| || || || || || Sbjct 268527 GTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTCCTCAAGCTGCTTGCCG 268586 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| ||||| || || |||||||| || ||||| Sbjct 268587 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTGGCTTTC 268646 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| || ||||| || || ||||| | || Sbjct 268647 ACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATGGTTTTTCCAGTCAAGGTC 268706 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 268707 TTCACAAAGATCTGCATTTTG 268727 >seq5446 Length=1541693 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || ||||| || Sbjct 1371122 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGTTTGCCG 1371181 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 1371182 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTC 1371241 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || |||||| ||||| | ||||| ||||| || ||||| ||| Sbjct 1371242 ACATTCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGGTCTTGCCGGTAAGGGTT 1371301 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 1371302 TTAACGAAGATTTGCAT 1371318 >seq4758 Length=893088 Score = 105 bits (116), Expect = 2e-17 Identities = 208/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637 ||| ||||| ||| ||||| ||||| ||| | || ||||| | || |||||||| Sbjct 498800 ACTTACGATGACCTGTGGAACTCCGCGCAGTTGCAGTTGGTACGCGAGGGAAAAATGCAC 498741 Query 238638 AGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAA 238697 | ||| | || ||||| ||||| |||||||| |||||||||||| |||| | || Sbjct 498740 GGCTTCCTCCGTATGTACTGGGCCAAAAAGATCCTTGAATGGACTGCCACTCCGGAACAA 498681 Query 238698 GCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAAC 238757 || || || || || ||||| || ||| ||||||||| || || ||| Sbjct 498680 GCGCTGGAGTACGCGATCCTGCTTAACGACAAGTACAGTCTCGACGGTCGAGACCCCAAC 498621 Query 238758 GGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGA 238817 || || || || ||||||||||| || | || | || || | || ||| ||| | Sbjct 498620 GGTTATGTGGGATGTATGTGGTCGATCGGAGGCATTCATGACATGGGCTGGAAGGAGCGG 498561 Query 238818 CCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTA 238877 |||| || || || ||| | | ||||| ||| | || ||| ||| || ||||| Sbjct 498560 GCTATCTTCGGTAAGGTTCGGTTTATGAACTATCAGGGCTGCAAGCGAAAGTTCGATGTG 498501 Query 238878 AATGCTTT 238885 ||||| || Sbjct 498500 AATGCCTT 498493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151313515311832