Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq5653 145 7e-30 >seq5653 Length=912194 Score = 145 bits (160), Expect = 7e-30 Identities = 209/291 (72%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 || || ||||||||||| || || |||| | ||| || || ||||| | ||| Sbjct 473996 ACTCCGGTGGACCCGAAACCTCCCTCGCCGCGTTCGGTGTCCTCCAGTTTGTCGACCAGC 473937 Query 5561 TCCACATCGGG--GAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 || | || || ||| | |||||||||||| | ||| || || || || || || Sbjct 473936 TCGAGTTCCGGATGAAAG--ATGCGCTCGCAGATGAACTGGGCAATGCGATCCCCGCGCT 473879 Query 5619 TTACCTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGTA 5676 | |||||||| || || |||| |||||||| ||| || || | |||||||||||| Sbjct 473878 TCACCTCGAACTCCACGT--CCGAGTGGTTGAACAACACGACACCAAGGTTGCCGCGGTA 473821 Query 5677 GTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCG 5736 || | || | |||||| |||||||| |||||||||| ||| || || || ||||| || Sbjct 473820 ATCCTCATCGACCACGCCGGCGCCCACATCGATGAAGTTCTTAACGGCGAGTCCGGACCG 473761 Query 5737 GGGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 |||||||| |||||||| | || || |||| ||| | |||||| || || Sbjct 473760 TGGAGCCACCCGGCCGTACGAACCCTCCGGAACCTGGACCTGCAGATCGGT 473710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430024241628848