Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4595 95.1 1e-14 >seq4595 Length=987418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| | ||| || |||||||||| ||||| ||| || | Sbjct 267392 CTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAA 267451 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| |||||||||||||| || | | ||||||||| ||||| ||| | Sbjct 267452 AATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTT 267511 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | | ||| ||| | || |||||||| ||||| || || ||||| Sbjct 267512 CTCAATAGTGTCCGACGGCTCTACCTCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCAC 267571 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 267572 GAAGATCTGCAT 267583 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| | | ||| ||||| | || |||||| || || |||||||||| | Sbjct 267813 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGAC 267872 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || ||| | || || |||||||| ||| || | || | |||||||||||| || Sbjct 267873 AGAGTG-CGCCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGG 267931 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||||| ||| | | | | || || || | | |||| Sbjct 267932 AATTCCCTCCTTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTCCAC 267991 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || || || ||||| || |||||||| Sbjct 267992 CTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | ||| || ||||||| |||||||| ||| || | Sbjct 268532 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 268591 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | | ||||||||| |||||| || | | Sbjct 268592 GATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTGGCTTTCACATT 268651 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || ||||||| | ||| ||| | || |||||||| || || | || ||||| Sbjct 268652 CTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATGGTTTTTCCAGTCAAGGTCTTCAC 268711 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 268712 AAAGATCTGCAT 268723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || | ||| || ||||||| |||||||| ||| || || Sbjct 268305 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAA 268364 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | ||||| || ||| || ||| | | | Sbjct 268365 ATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTC 268424 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | | |||| ||| | || ||||| || |||||||| || ||||| Sbjct 268425 TCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACG 268484 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 268485 AAGATCTGCAT 268495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421221658969754