Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5342 125 4e-24 seq5581 122 5e-23 seq5619 118 6e-22 seq5382 118 6e-22 >seq5342 Length=2476920 Score = 125 bits (138), Expect = 4e-24 Identities = 84/92 (91%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 11441 AATAAAAAA-TCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||||| | |||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 1663890 AATAAAAAAGTGAAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 1663949 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| ||||||||||||||||||||| Sbjct 1663950 ACGACGCTCTAACCAACTGAGCTAATGGGCCG 1663981 >seq5581 Length=1898396 Score = 122 bits (134), Expect = 5e-23 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 126413 AAAAAAAAATCACAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 126472 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 126473 GACGCTCTAACCAGCTGAGCTAATGGGCC 126501 Score = 120 bits (132), Expect = 2e-22 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| || ||| ||||| || ||||||||||| |||||||||| ||||||||| Sbjct 133787 AAAAATAAAAATAAAAAAAATTCTC-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 133729 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| |||| |||||||||||||||| Sbjct 133728 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 133687 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 901958 AAAAAATTAATGATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 901899 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||| |||||||||||||||||||| ||| Sbjct 901898 CGCTCTAACCAACTGAGCTAATGGGCCTTCG 901868 Score = 113 bits (124), Expect = 2e-20 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| || ||||| | || |||||||||| |||||||||| |||||||||||||| Sbjct 127578 AGAATGAAAAAAAATTGAACGCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 127519 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| ||||||||||||||| Sbjct 127518 TTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 127483 >seq5619 Length=2779715 Score = 118 bits (130), Expect = 6e-22 Identities = 90/103 (87%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 11430 AATAT-AGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| |||| |||| |||| || | |||||||||| |||||||||| |||||||| Sbjct 555381 AATATTAGAAA-AATACAAAAGAAATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTC 555439 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 555440 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 555482 >seq5382 Length=112986 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| |||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 99742 AAAAAGAAAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 99801 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 99802 TCTAACCAACTGAGCTAATGGGCC 99825 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 97849 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 97790 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 97789 TGAGCTAATGGGCC 97776 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 99016 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 99075 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 99076 TGAGCTAATGGGCC 99089 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 99923 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 99982 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 99983 TGAGCTAATGGGCC 99996 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261472862439304