Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1583 167 4e-37 seq4108 154 2e-33 seq4748 125 1e-24 seq5454 111 2e-20 >seq1583 Length=11539 Score = 167 bits (184), Expect = 4e-37 Identities = 193/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 6407 GCCAAGCGTCATCGCAAGGTTCTACGAGACAACATCCAAGGTATCACGAAGCCTGCTATC 6466 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | ||||||||||| | ||||||| | |||| ||||||| Sbjct 6467 CGCCGTCTAGCAAGAAGAGGTGGAGTCAAAAGAATCTCTGGTCTCATCTACGAAGAGACA 6526 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| ||||| | ||| || |||| |||||| || ||| ||| Sbjct 6527 CGCGGTGTACTGAAAGTCTTCTTGGAGAATGTCATCCGTGATGCCGTCACCTACTGTGAG 6586 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| ||||||| | ||||||||| |||| | || ||| Sbjct 6587 CACGCCAAACGCAAGACCGTCACAGCCATGGACGTGGTCTATGCACTGAAGAGGCAGGGC 6646 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || |||||||| Sbjct 6647 CGTACCCTGTACGGTTTTGG 6666 >seq4108 Length=39989 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || ||||||||||| || || || ||||||||||| Sbjct 554 CGCAAAGCGTCATCGCAAAGTGTTGCGTGATAACATCCAGGGTATTACAAAGCCAGCTAT 613 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| ||||| ||||| | |||||| | | || || || | Sbjct 614 CCGCCGTTTGGCTCGTCGTGGCGGAGTGAAGCGCATATCTGGACTTATTTACGAGGAAAC 673 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | || | ||| |||||||| ||||| | ||| ||||| Sbjct 674 ACGCGGTGTTCTAAAGGTATTTTTGGAGAACGTTATCCGCGATGCAGTTACCTACACCGA 733 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| | || || || ||||| | ||||| Sbjct 734 ACACGCCAAGAGGAAGACGGTCACAGCCATGGACGTTGTGTACGCCCTGAAAAGGCAAGG 793 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 794 CCGCACCCTGTACGGTTTCGGCGGTTAA 821 >seq4748 Length=15057 Score = 125 bits (138), Expect = 1e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || ||||||||||| || || || ||||| ||||| Sbjct 8734 CGCAAAGCGTCATCGCAAAGTGTTGCGTGATAACATCCAGGGTATTACAAAGCCTGCTAT 8675 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| ||||| ||||| | |||||| | | || || || | Sbjct 8674 CCGCCGTTTGGCTCGTCGTGGCGGAGTGAAGCGCATATCTGGACTTATTTACGAGGAAAC 8615 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | || | ||| |||||||| ||||| | ||| ||||| Sbjct 8614 ACGCGGTGTTCTAAAGGTATTTTTGGAGAACGTTATCCGCGATGCAGTTACCTACACCGA 8555 Query 16612 GCACGCTAAACGTAAGACTGTCAC 16635 ||||| || | ||||| ||||| Sbjct 8554 ACACGCCAAGAGGAAGACGGTCAC 8531 >seq5454 Length=2883911 Score = 111 bits (122), Expect = 2e-20 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || ||||||||||| || ||||||||||| ||||| Sbjct 966770 CGCCAAGCGTCATCGTAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCGGCTAT 966829 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| ||||| ||||| || |||||| ||||||| ||| | || ||||| | Sbjct 966830 TCGTCGTTTGGCCCGTCGCGGTGGTGTGAAGCGTATCTCTGGCTTGATTTACGAAGAAAC 966889 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 966890 TCGCGGTGT 966898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069939077522