Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1488 87.8 4e-13 seq4821 82.4 1e-11 >seq1488 Length=2084 Score = 87.8 bits (96), Expect = 4e-13 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || ||||| | | |||||||||||||| || | | | ||| Sbjct 1866 ACATGATCATTGTAGATATGTCTGATATTCATTTCATCTTATTTAAAAATTATAATCAAG 1925 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || || || || | |||| || || |||||| ||||||||||||||| ||||||||| Sbjct 1926 TTAGCGTTGTCGCGTATCAAATGTTTTGGTATTTTTGTATAAGTTTGACATAGATAGAAG 1985 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAA 7437 ||| | | || || |||||||| |||||| Sbjct 1986 GAGTCTATGTGTTTATGACGACCCATACAGAAA 2018 >seq4821 Length=56267 Score = 82.4 bits (90), Expect = 1e-11 Identities = 118/164 (72%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 4532 TTCTTAAGAAAATACACC-TAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590 ||| ||||||||| |||| || ||| | | | ||||| ||||| |||||||| Sbjct 27738 TTCCTAAGAAAATTCACCGTATACTT-AGGTACAAACAATCTTGTTGGCTAAAATCATAC 27796 Query 4591 ATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTAT 4650 || ||| || ||| | |||| |||||| ||||| |||| ||| || |||| | Sbjct 27797 ATTGATCTTAACACCAAACATAGAAAGGCAGCTAAAAATGAATTCGTAAAGAATTTTTTT 27856 Query 4651 AAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 ||||||||||||||||| || | ||| || || ||||| || || Sbjct 27857 AAATTAATGAATAATGCTGTGTATGGGAAAACAATGGAAAACGT 27900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97967705531716