Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5380 405 6e-108 seq5351 212 8e-50 >seq5380 Length=870010 Score = 405 bits (448), Expect = 6e-108 Identities = 1222/1879 (65%), Gaps = 20/1879 (1%) Strand=Plus/Plus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 |||||||| ||||| ||||||| | ||| || || || || |||||||||||||| Sbjct 557585 CTTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCC 557644 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 ||||| || || |||| |||||| || || ||| || || || | || Sbjct 557645 GGTTTTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTTTGG 557704 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 ||||| | ||| || || | || || |||||||||||||| || || | || || || Sbjct 557705 CTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCGGC 557764 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62223 |||||| || | | ||| | |||||||| | ||||| |||| || | | | Sbjct 557765 CATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGACCTT 557824 Query 62224 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTGA 62280 || | ||| || || || | |||||||| || || ||| | | || ||||| | Sbjct 557825 CTGCGGGATGGCTTCGATGTTTTGAATGGAGCC-CCTGCTGGAAATTATTTGGTTCTTCA 557883 Query 62281 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62340 | ||||| | ||| || | || || | | || | | || | || || |||| Sbjct 557884 TATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCACTT 557943 Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400 ||||||| || |||| |||| | ||||||||||||| | |||||||| || | || | Sbjct 557944 GAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGATT 558003 Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460 | || || |||| ||| || ||||| |||||||| |||||||| ||||| | | | Sbjct 558004 CGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGAGT 558063 Query 62461 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 62520 | || | ||||| | |||| || || || | ||| | ||| || | || | Sbjct 558064 TCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTCGTTG 558123 Query 62521 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 62580 | || |||||||| ||||| || ||| |||| | Sbjct 558124 GCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTCCCTTCATAGG 558183 Query 62581 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62640 | |||||||| || || ||||||| || |||||||| ||||| || || ||||| |||| Sbjct 558184 TTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAAA 558243 Query 62641 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 62700 | ||||| || |||| || ||| | | ||||| || ||| | || | | Sbjct 558244 TAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGGAATCGCA 558303 Query 62701 AGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62760 |||||| || ||||| || || || ||||| || || || | || | ||||||| || Sbjct 558304 TGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTCTCAAAT 558363 Query 62761 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62820 | || | | || || || | |||||||| || ||||| || || || || |||||| Sbjct 558364 TGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAAGATTTT 558423 Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TATTA 62877 || | ||| || || || ||||| ||||| | | || | | | Sbjct 558424 TGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCGGGTGTGA 558483 Query 62878 CAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937 | |||||||| | ||| | ||||||| || || || || | ||||| | | | | Sbjct 558484 CGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGT 558543 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 | | || || || |||||||| || || ||||||||||| || | ||| || || || | Sbjct 558544 ACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGC 558603 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 |||| ||| || ||||| ||| | || || | ||| | || ||||| | ||| | | Sbjct 558604 TCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCT 558663 Query 63058 CTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCT 63115 | |||||||| ||| | | ||| ||||||| | || | | || | | || |||| Sbjct 558664 CAATAATCGCGAACCACAAGGACT-GAGCCTTAACTACTCGGTTGGCACGACC---CTCT 558719 Query 63116 TTCGTATAGTGTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 | | || | | |||| ||| || ||||| |||||||||| || | || || Sbjct 558720 TGCTCGTACTTCAAGTACAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGG 558779 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 |||| || |||||||| | ||||| || ||| ||| || |||||||| |||||| Sbjct 558780 CATTTATGAGGACACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTCATGAAGAGA 558839 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 || || ||||| | || |||| || | | | || || || ||||| || || Sbjct 558840 TCGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTGTTT 558899 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 || || || ||||||||| | | | ||| |||||||| || |||| ||| || || | Sbjct 558900 TTCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAG 558959 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 | ||||| || ||| ||||||||||| | || | || ||| ||| | || ||| Sbjct 558960 GCGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACCCTC 559019 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 | ||| |||| | ||| || || | |||||||| ||| | || || | || | || Sbjct 559020 AGCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTGCCCTTTGCC 559079 Query 63474 CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 ||||| | | | ||| || || || || |||||| ||| || || | ||||| Sbjct 559080 CGAATGCAATGCACATT--CAGTCCAATACCACCTGCCGATTTTGAAATCATGGCGCACT 559137 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63591 | | | | | | || ||||| || || | ||||| | | || ||||| Sbjct 559138 GCTCCACGGATTTGAAAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGAAACACG 559197 Query 63592 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63651 ||||| || | ||| | || | || ||| | || || || || || ||||| Sbjct 559198 AAGACAACTGTGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAAAGA 559257 Query 63652 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63711 || || || | |||||||| || || | ||| | || |||||| | || |||| Sbjct 559258 ATCGCTCGGACAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGTGGATTC 559317 Query 63712 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63771 | | ||| || ||||| ||||| || || || | ||| ||||||| ||| | || | Sbjct 559318 CAATTGCCACGCGCATCAACATATGTTGTGGGCGCTCAGCGATCTTTCCGTTCCTCTTAA 559377 Query 63772 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831 ||| || ||| ||| | || ||||||||||||||||| ||| |||||| || || | Sbjct 559378 GCAAATATGATCGTTCGAGGGTCTTAAAACCAAAATAGTTATATCCAAAGTCGCGATCAT 559437 Query 63832 AAATAATAACCGAGTTGAG 63850 | || ||| ||||| || Sbjct 559438 AGATTATAGAGGAGTTTAG 559456 >seq5351 Length=991022 Score = 212 bits (234), Expect = 8e-50 Identities = 491/739 (66%), Gaps = 7/739 (1%) Strand=Plus/Plus Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 |||||||| |||||||| || || || |||||||| || || || || |||| Sbjct 257258 ACTCCCATGCGCTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGC 257317 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 || || | |||||||| | ||| || || | || || || ||| || ||||| Sbjct 257318 GAAATCATCTCCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAAC 257377 Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183 || | ||| | || || ||||| || ||||| ||||| || |||||||| Sbjct 257378 TCCACCAGCAAACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATG 257437 Query 33184 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 33243 || ||||| || ||||| || || | || || || || || ||||||| |||||||| Sbjct 257438 CCGATAAGGTTCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCG 257497 Query 33244 GTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 33303 || || | | | ||| | ||| | |||| | || | ||||||| Sbjct 257498 CGAATGATTTCAATGATGCGCTCTCGCTTGGGTCGCTGCACAAGGTGCTGGAACATCAGC 257557 Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 |||||||||||| |||||||||||||| || || || |||||||| || || ||| Sbjct 257558 ACTGCGAAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGT 257617 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||| ||||| || ||||| || ||||| ||||| || |||||| Sbjct 257618 CCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAG 257677 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---- 33479 || ||||| || || |||||||| || | | ||| || | | |||| | || Sbjct 257678 ATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTG--GCTGACTTGGAGG 257735 Query 33480 -TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| ||||| || ||||| || || ||||||||||| ||||| | Sbjct 257736 AGATCCAGGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGCGT 257795 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 | || || || | | | | ||| | || || ||||||| | ||| |||| Sbjct 257796 TGAACAGGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTACA 257855 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | ||||| || | ||| || ||||| ||||| || |||||||| || | ||||| || | Sbjct 257856 TCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTGA 257915 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 |||| || || | || || ||| ||| ||| ||||| || || || || ||||| Sbjct 257916 TCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGCTG 257975 Query 33719 CAAAAAACGCCAATACATG 33737 | || || ||||| || || Sbjct 257976 CGAAGAAGGCCAACACGTG 257994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622902394522640