Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4758 134 1e-26 seq5380 132 5e-26 seq5649 82.4 7e-11 >seq4758 Length=893088 Score = 134 bits (148), Expect = 1e-26 Identities = 184/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| ||||| ||||| | ||| || |||||||||||||||||||| || || |||||| Sbjct 498755 GAGGGAAAAATGCACGGCTTCCTCCGTATGTACTGGGCCAAAAAGATCCTTGAATGGACT 498696 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 ||||| || || ||||| ||||| | || || ||||| | |||||||||||| Sbjct 498695 GCCACTCCGGAACAAGCGCTGGAGTACGCGATCCTGCTTAACGACAAGTACAGTCTCGAC 498636 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGA 71896 ||||| || || ||||||||||| || || |||||| || | || |||| || | Sbjct 498635 GGTCGAGACCCCAACGGTTATGTGGGATGTATGTGGTCGATCGGAGGCATTCATGACATG 498576 Query 71897 AGCTTTTTAGAACGTCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAA 71956 ||| || || | || ||||| |||| | |||||| | | || ||| | Sbjct 498575 GGCTGGAAGGAGCGGGCTATCTTCGGTAAGGTTCGGTTTATGAACTATCAGGGCTGCAAG 498516 Query 71957 CGCAAGTTCAATGTGAA 71973 || |||||| ||||||| Sbjct 498515 CGAAAGTTCGATGTGAA 498499 >seq5380 Length=870010 Score = 132 bits (146), Expect = 5e-26 Identities = 552/854 (65%), Gaps = 23/854 (3%) Strand=Plus/Plus Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172 ||||||||| ||||| | ||||||||| || || || | || ||||||||| || ||||| Sbjct 557591 CACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCCGGTTTT 557650 Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTA--TAGGTTGGATTG 147230 | || || ||| || || ||| ||||| | || |||| ||| |||| | Sbjct 557651 AAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGT--AAGCTTTCCGTAGTTTGGCTCT 557708 Query 147231 GCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATG 147290 |||||| || |||| || ||||| ||||||||| ||| || || || |||||||| Sbjct 557709 GCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCGGCCATT 557768 Query 147291 TCCAACACTACTTTTTGTTTA-ATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTG 147349 | || | || || | |||||||| |||| ||| | || | || || || Sbjct 557769 TT-AATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGACCTTCTG 557827 Query 147350 TGGAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTTTTATCATGATATC 147409 || || | || || ||||| | || || || | ||| |||| || | ||||| Sbjct 557828 CGGGATGGCTTCGATGTTTTGAATGGAGCCCCTGCTGGAAATTATTTGGTTCTTCATATC 557887 Query 147410 T--GTCGAATA--TACGTTGGTGTCTACGAGTTTATCGACGAGATGCTGATTGACCACTT 147465 ||| | | | | | ||| || || || || || || |||||||||| Sbjct 557888 ATCGTCCCACAAGTCCAATTCAGTCAG---GTCCCTCAACAAG-TGATGGTTGACCACTT 557943 Query 147466 GATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGACT 147525 || | ||||| |||||||||| || ||| | |||| | ||| |||||||||| || | Sbjct 557944 GAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGATT 558003 Query 147526 CGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGAAT 147585 ||||||| || | |||||| ||||| | ||| || ||||| ||| | | | || | Sbjct 558004 CGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGAGT 558063 Query 147586 TGCGTAAGCCGTGCATAGCCAT-TTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCATTC 147644 | | | |||||| | || ||| ||| || | | ||||| ||| || ||| Sbjct 558064 TCCTGACACCGTGCTTCTTGATCGACTC-CTTCAGTTTCTGCCAGTCCCACAG---GTTC 558119 Query 147645 GATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCATCG 147704 | | | | | | ||||| || |||| | || || |||| | ||||| || || Sbjct 558120 GTTGGCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTCCCTTCA 558179 Query 147705 TAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACT-TAGTGCACCATA 147763 || | ||||||| || | | | ||| || || | | | | || | || || || Sbjct 558180 TAGGTTTCGTATGGACCATCAATCTCAGCCAGCTC-ACAACTGGCCTCCAAAGCGCCGTA 558238 Query 147764 ATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTAGGGCAT 147823 ||||||||||| | |||| | ||| ||| | ||| |||| || || ||||| | Sbjct 558239 GTAAATAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGGA- 558297 Query 147824 ATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCGGTGTC 147882 ||| || | || | || || | || |||| ||||| || | ||| || |||| Sbjct 558298 ATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTC 558357 Query 147883 TGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTTTATTGA 147942 | ||||| ||| | || | || |||||| | || | ||||| || || || | Sbjct 558358 TCAAATTGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAA 558417 Query 147943 GATTATTGGTAACC 147956 |||| ||||| ||| Sbjct 558418 GATTTTTGGTGACC 558431 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26764 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAAT 26823 |||| ||||| | || || || || | || || || | |||||| | || | ||| Sbjct 656577 ACAAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAAC 656636 Query 26824 CAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCG 26883 | || || ||||| | |||||| |||||| ||||||||||| || ||||| | Sbjct 656637 CGTCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAG 656696 Query 26884 ATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACT 26943 |||| || | || || | || ||||| || || ||||||| | | | | || || | Sbjct 656697 ATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGATT 656756 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||| || || || ||| | || |||| || ||||| | || || Sbjct 656757 ATAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGACTTCGTGGTGG 656808 >seq5649 Length=2333656 Score = 82.4 bits (90), Expect = 7e-11 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 115193 CCAAAGGCTTGCACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGT 115252 |||||||| |||||||||| ||||||||||| ||||| |||| | |||||| |||| || Sbjct 452868 CCAAAGGCCTGCACGGATTCCATGTTCACGAGTTCGGAGACAACACCAACGGTTGCATGT 452809 Query 115253 CTGCAGGCGAGCATTTTAA-CCCTACGAACATGGCTCACGGTGCGCCCA 115300 | | || ||| ||||| || ||| | || || |||||||| |||| Sbjct 452808 CGTCCGGGCCGCACTTTAATCCGTAC-AGCAAGGAGCACGGTGCACCCA 452761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478627972206880