Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5380 311 2e-79 seq5466 84.2 6e-11 >seq5380 Length=870010 Score = 311 bits (344), Expect = 2e-79 Identities = 1114/1727 (65%), Gaps = 31/1727 (2%) Strand=Plus/Minus Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 ||| ||||| || |||||||| ||||| || || ||||| ||||| | |||| | || Sbjct 559355 TGAGCGCCCACAACATATGTTGATGCGCGTGGCAATTGGAATCCACGGAGAGGATATCGA 559296 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAAC 363566 ||| || | ||||| || || ||| | | || | || || || ||| ||||||| Sbjct 559295 TGCTGCTGTGGAAACCTACAATCTTTTGTCCGAGCGATTCTTTACTCATGCCTCGCCAAC 559236 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | |||| || | |||||| ||||||| || || || | | |||| Sbjct 559235 TCTTTTTGCCGCTGCCACAAATCGCCCACAGTTGTCTTCGTGTTTCCTCTTGACCATGAC 559176 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 || ||| || |||||||| || || | | | || | || || | ||||| || Sbjct 559175 GGCCGACTCGATCGAGGGCATTTTCAAATCCGTGGAGCAGTGCGCCATGATTTCAAAATC 559116 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACATTCGC 363744 ||||| || ||||| | || || || |||| ||| || || | ||| || Sbjct 559115 GGCAGGTGGTATTGGACTGA--ATGTGCATTGCATTCGGGCAAAGGGCACCTCGATTTGC 559058 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 ||||| || ||| ||||| |||||||||||||| | || ||| |||| ||| Sbjct 559057 GGCACCAATGGCACCTCCAATGGTCTGGTTCCCATGCTGAGGGTCTTTAACAACGTTGCA 558998 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 |||| || || ||||| || || ||||| || || |||||||| || || ||||| Sbjct 558997 CGGTATGTGGATCAGGGAGGCGGCAAGCGTCCTGGCGCCTTTGCTATTTACCTGGAGCCA 558938 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 ||| | ||| | || ||||| || |||||| ||||||||| ||||| || || Sbjct 558937 TGGCATTCGGATGTCTTCGAGTTCCTCGAGCTCAAGAAAAACACCGGAAAGGAAGAGAAT 558878 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 |||||||| || | ||||| || | ||| | | || | || ||||| || || ||| Sbjct 558877 CGTGCACGCGACTTATTCTACGCCTTGTGGATACCCGATCTCTTCATGAAACGTGTAGAG 558818 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 || || ||||||| ||| | || || || |||| || || ||| |||||| ||| Sbjct 558817 GCCAACGAGGATTGGTCCCTCATGTGTCCTCATAAATGCCCCGGCCTTCACGATGTTTGG 558758 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA-C 364103 || ||||| | || || ||| ||||| || ||||| || | || Sbjct 558757 GGCGACGAATTTGAAAAGCTGTACTTGAAGTACGAGCAAGAGGGTCGTGC-CAACCGAGT 558699 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 | || || ||| | ||||| || || || || ||||| | || || |||| || Sbjct 558698 AGTTAAGGCTCAGTCCTTGTGGTTCGCGATTATTGAGGCGCAGGTGGAAACGGGAAATCC 558639 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 |||||| | | |||||| | |||||||| ||| |||||||||| | |||| || || Sbjct 558638 TTATATGCTCTTTAAAGATGCCTGCAACCGGAAGAGCAACCAGCAGAATGTTGGCACTAT 558579 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 || |||||||| || || || || | || ||| | || || || |||| ||| || Sbjct 558578 CAAGTGCAGCAACCTTTGCACAGAAATCGTAGAGTACTCTGCGCCAGATGAGATTGCAGT 558519 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA---GATGGTACTTTTGACCA 364340 ||| ||| | || || ||||| ||| ||| || | | || || | || Sbjct 558518 ATGCAACTTGGCATCCATCGCCCTTAACATGTTCGTCACACCCGAGAAGACGTACGATTT 558459 Query 364341 CCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAA 364400 | || | || | || || ||| | | || ||||| ||||| | ||||| | Sbjct 558458 CAAGAAACTAAAAGAAGTTACCAAGACGGTCACCAAAAATCTTAACAAGATAATCGATAT 558399 Query 364401 GAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCT 364460 || |||||||| | || || || || || ||| || | |||||||| | || | Sbjct 558398 AAACTATTATCCCCTGCCGGAGGCAAAGAAATCCAATTTGAGACATCGCCCCGTGGGCAT 558339 Query 364461 TGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG---ATGGCATTTGATTCGCC 364517 || || ||||| ||||||||| | |||| |||| | | | | ||| Sbjct 558338 CGGAGTTCAGGGTTTCGCTGACGCCT---TGATTCTCATGCGATTCCCCTATGAAAGTGA 558282 Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 || ||| || || | ||| || |||| |||||||| || || | | ||| || || Sbjct 558281 AGAAGCTGGTCTTTTGAATCAGCAGATATTTGAAACTATTTACTACGGCGCTTTGGAGGC 558222 Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 ||||| |||| | | | || ||| || ||||| ||| ||| | Sbjct 558221 CAGTTGTGAGCTGGCTGAGATTGATGGTCCATACGAAACCTATGAAGGGAGCCCCGTAAG 558162 Query 364638 GCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG-- 364695 |||| | | |||| || | ||| | |||||| | || ||| ||||| Sbjct 558161 TAAGGGTATTCTGCAGTACGACATGTGGGACAAAACGCCAACGAACCTGTGGGACTGGCA 558102 Query 364696 GATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCC 364755 || || | | | | | |||||||| ||| | |||||||| || || || Sbjct 558101 GAAACTGAAGGAGTCGA--TCAAGAAGCACGGTGTCAGGAACTCCCTGCTTGTGGCTCCT 558044 Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815 |||||||| || |||||||| ||||| | || |||||||| | ||||| |||| ||| Sbjct 558043 ATGCCCACTGCATCTACTGCCCAGATTATGGGCAACAACGAATCTTTCGAGCCGTATACG 557984 Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTA 364875 | ||| |||| | | || ||||| ||||| ||||||| || || || | || | Sbjct 557983 ACTAATATTTACACTAGACGAGTTCTGTCCGGCGAATTTCAAGTGGTCAACCATCACTTG 557924 Query 364876 GTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCC 364935 | | ||| || | || | |||||| || ||||||||| | || || || Sbjct 557923 TTGAGGGACCTGACTGAATTGGACTTGTGGGACGATGATATGAAGAACCAAATAATTTCC 557864 Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTC--CAGAAGATCTGAAGCCTATTTACA 364993 | || || | || ||||| || | | |||||| || || | |||||| Sbjct 557863 AGCAGGGGCTCCATTCAAAACATCGAAGCCATCCCGCAGAAGGTCCGA--GATCTTTACA 557806 Query 364994 AAACCGTATGGGAAATTTCCATGCGAACTCT--CATTGATATGGCGGCCGATCGCGGTGC 365051 ||||||| |||||||| || || ||| ||| ||| | ||||| || ||||| ||||| Sbjct 557805 AAACCGTGTGGGAAATCTC--TGTGAAGTCTACTATTAAAATGGCCGCTGATCGAGGTGC 557748 Query 365052 TTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCTCCGCCAAG 365109 ||| ||| ||| |||||||| || ||| ||||| || | |||||| || || ||| Sbjct 557747 TTTCATCGATCAAAGCCAGTCCTTCAAC--ATTCATGTGGCAGAGCCAAACTACGGAAAG 557690 Query 365110 CTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||||| ||||| || || ||| |||||| | || ||||| || || Sbjct 557689 CTTACGTCCATACACTTTTACTCCTGGAAAGCTGGGCTTAAAACCGG 557643 >seq5466 Length=1802269 Score = 84.2 bits (92), Expect = 6e-11 Identities = 288/442 (65%), Gaps = 18/442 (4%) Strand=Plus/Minus Query 111489 GGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACC 111548 |||||||| ||||| || || || || || |||||||||||||| || || ||| |||| Sbjct 949638 GGTGATCTGGGACCGGTGTATGGCTTCCAGTGGCGCCACTTTGGGGCGGAGTACGGAACC 949579 Query 111549 ATGC----ACGACT-CATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 ||| |||||| || | | || |||| || || || | |||| || || Sbjct 949578 -TGCGACGACGACTACACAGG---CA-AGGGCGTCGACCAGTTGCGCCATGTGATCGACA 949524 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||||||||||| | | ||||| || ||| || ||||| || | Sbjct 949523 CCATTAAGAACAACCCGTCGGACAGGCGCATCATCATGTCGGCGTGGAATCCGTTGGACA 949464 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT-----ACACGA 111718 | |||||||| ||||| || || ||| || ||||| || || | ||| Sbjct 949463 TACCGAAAATGGCTCTTCCTCCGTGCCATTGCCTGGCGCAGTTCTACGTTTCCCAAACG- 949405 Query 111719 CGGGATG--CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCG 111776 || | || ||||| ||||| |||| ||| | ||| || || || || || || || Sbjct 949404 CGCGGTGAACTTTCCTGCCAGCTGTACCAGAGGAGTGCCGACATGGGCCTGGGCGTACCC 949345 Query 111777 TTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAA 111836 |||||||| || ||||| || || || | | | || || ||| | || |||||| Sbjct 949344 TTTAATATCGCGTCCTACGCCCTGCTCACCTACATGATTGCCCATGTAACGGGTCTCAAG 949285 Query 111837 CCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCA 111896 ||||| || ||| | ||| | || || ||||| || || |||||| | || || Sbjct 949284 CCGGGCGACTTCGTGCACACCCTGGGTGACGCGCACGTCTATCTGAACCACGTGGAACCA 949225 Query 111897 CTTAAAACACAGTTGAAGCGCA 111918 || || ||| ||| ||||| Sbjct 949224 CTGAAGGAGCAGCTGACGCGCA 949203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303257512699628