Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4595 107 2e-18 seq5614 105 5e-18 >seq4595 Length=987418 Score = 107 bits (118), Expect = 2e-18 Identities = 185/265 (70%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCCGCATTTAC-CCTCCTCGTAGCCTCAGTACCA 16730 ||||||| ||||||||| | ||||| || | || ||||| || || | || |||| Sbjct 267322 TTTATTTGGAAATGTATT-TAGTTTAA--GCCTGAACTCCTCCGCGGAGACGGAGCACCA 267378 Query 16731 TATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATT 16790 |||| || |||||||| || |||||||| |||| || || ||||||||| || Sbjct 267379 AGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCGTCCTCCAGTT 267438 Query 16791 GTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT 16850 | ||||| || |||| | ||||| || || ||| | ||||| ||||| |||| Sbjct 267439 GCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATTT 267498 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 |||||| | | | |||||| ||||| |||| |||||||||||||||| Sbjct 267499 TGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACCTCCAGAGTGATGGTTTTTCCGG 267558 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| Sbjct 267559 TAAGGGTCTTCACGAAGATCTGCAT 267583 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || |||||||| || ||||||||||||| | Sbjct 268497 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 268556 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | || ||||| || | || || ||||| || || ||| Sbjct 268557 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 268616 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| ||||| | | | || ||| |||||| Sbjct 268617 ATTCCCTCCTTGTCCTGAATTTTGGCT--TTCACATTCTCGATCGTATCGGAGGGCTCAA 268674 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||| ||||||||||| |||| || || ||||| |||||||||||| Sbjct 268675 CCTCCAGGGTAATGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 268727 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || || ||||| || ||||||||||||| | Sbjct 268041 CCACCACGGAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 268100 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | || |||||| || | || ||||| ||| | || || ||||| || || Sbjct 268101 AAAGT----GCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGG 268156 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 ||| | ||||| ||||| |||| |||||| | | | ||||| ||||| Sbjct 268157 AGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTC 268216 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||| |||||||| ||||||||||| || || || || |||||||| Sbjct 268217 CACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 >seq5614 Length=3457230 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | ||| |||| ||||| || ||||||||||| ||||||||||||| | Sbjct 1201155 CCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 1201096 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | || ||||| ||| | || | ||||| ||||| || Sbjct 1201095 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1201036 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | || ||| |||||| Sbjct 1201035 ATACCCTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCAATGGTATCGGAGGGCTCGA 1200978 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || |||||||| |||||||| Sbjct 1200977 CCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| || ||||||||||| ||||||||||| | | Sbjct 1200927 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200868 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | || ||||| ||| | || | ||||| ||||| || Sbjct 1200867 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200808 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | || ||| |||||| Sbjct 1200807 ATACCCTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCAATGGTATCGGAGGGCTCGA 1200750 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || |||||||| |||||||| Sbjct 1200749 CCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| || ||||||||||| ||||||||||| | | Sbjct 1200699 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200640 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | || ||||| ||| | || | ||||| ||||| || Sbjct 1200639 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200580 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | || ||| ||| || Sbjct 1200579 ATACCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTATCGGAGGGTTCGA 1200522 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||||||| || ||||| | || |||||||| |||||||| ||| Sbjct 1200521 CCTCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCATATTG 1200469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405059592444460