Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4995 140 2e-28 seq1716 140 2e-28 seq5580 138 8e-28 seq1591 136 3e-27 seq5446 100 2e-16 seq4370 98.7 7e-16 seq4595 96.9 2e-15 seq4694 89.7 3e-13 seq5380 84.2 1e-11 >seq4995 Length=9752 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1846 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1905 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1906 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1940 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 3835 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 3894 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 3895 GCCAATATTTAGCTTTA 3911 >seq1716 Length=11115 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1631 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1690 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1691 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1725 >seq5580 Length=1179668 Score = 138 bits (152), Expect = 8e-28 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | |||||||| || | ||| ||||| ||||| |||||||| ||||| Sbjct 1155220 ATGGCCACCGTTAACGTAAACCGCAGCGTGACGGACATCTTCTATCGCTACAAGATGCCA 1155161 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||||| || |||||||| || ||||| ||||| ||||||||||| | || |||| Sbjct 1155160 CG--TCTGCAGGCAAAGGTCGAAGGCAAGGGGAACGGCATTAAAACCGTTCTCGTTAACA 1155103 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || | ||||| ||| || | || || || || ||||| || || || |||||||| | Sbjct 1155102 TGGCCGAAGTAGCTCGCGCTATTGGCCGTCCGGCAACCTATCCAACAAAGTATTTCGGCT 1155043 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||| | ||||| ||||| | ||| ||||| || Sbjct 1155042 GCGAGTTGGGCGCCCAGACTCTGTTCGATCATAA 1155009 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433 ||||| ||||| | || ||||||||||| | | || |||| ||||||| |||| || Sbjct 1154948 AACGAACGCTTTGTTGTGAACGGATCGCACGA-TGTGAACAAGTTGCAGGATCTACTGGA 1154890 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493 ||||| |||||||||||||||||||| | |||||||| || ||||||||| | || | Sbjct 1154889 TGGCTTCATTCGCAAGTTTGTGCTGTGCCCCGAATGCGACAATCCGGAGACCAATCTGAC 1154830 Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553 ||| ||| |||| | | ||||| || ||| ||||| || || || | |||||| Sbjct 1154829 TGTATCTGCCAAAAACCAAACCATTTCCCAGTCTTGCAAGGCATGTGGCTTCCATGGTCT 1154770 Query 6554 GCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 | || | | |||||| | ||||| || || |||| ||||| ||| Sbjct 1154769 GTTGAAGGTGAACCACAAAGTGAACACGTTTATTGTGAAAAATCCCCCA 1154721 >seq1591 Length=1283 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 619 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 560 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 559 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 525 >seq5446 Length=1541693 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | |||||| || || || |||||| || || ||||| || | Sbjct 1371090 TACCACCACGCAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 1371149 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | ||||| ||||| || || || || || ||||| | || Sbjct 1371150 ACAGGGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGG 1371209 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||| || ||||||||||| || || || | ||| | Sbjct 1371210 GGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCA 1371269 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || ||||| || || || || | |||||| ||||| || |||||| Sbjct 1371270 CCTCCAAGGTAATGGTCTTGCCGGTAAGGGTTTTAACGAAGATTTGCATG 1371319 >seq4370 Length=3938 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3581 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 3640 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 3641 GGTTATATTTAG 3652 >seq4595 Length=987418 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || | || ||| | ||||||||| | ||| |||||| || |||||||||| Sbjct 267809 CATT-CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAAT 267867 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||| | || | || || | || || ||||| || || || || || ||||| | Sbjct 267868 CAGACAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTG 267927 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | || || |||||| ||||| ||| ||||||| || ||| || | Sbjct 267928 GAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCT 267987 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || | || || || || || |||| ||| |||||||| ||||||||| Sbjct 267988 CCACCTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCATG 268040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||| ||||| || || || ||||| || || ||||| || ||| Sbjct 268041 CCACCACGGAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 268100 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| | || || | || || |||||||| || || || || ||||| | || Sbjct 268101 AAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 268160 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||||| ||||||||||| || || || || || Sbjct 268161 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACC 268220 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| |||||||| ||||||||| Sbjct 268221 TCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATG 268268 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||| ||||| || || || |||||| || || |||||||| ||| Sbjct 267585 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 267644 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| | || || | || || ||||| || || || || || ||||| | || Sbjct 267645 AAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 267704 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || || ||| || ||||||||||| || || || || || Sbjct 267705 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACC 267764 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| |||||||| |||||||| Sbjct 267765 TCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 267811 >seq4694 Length=4974 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||| ||||||||||||| |||||| |||| Sbjct 490 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCACACGGTACTTGTTTACTATCGCTCTCAT 549 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 550 GGTTATATTTAG 561 >seq5380 Length=870010 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || | |||||| || | |||| |||||| ||||| || |||||||| Sbjct 656809 ACCACCACGAAGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGA 656750 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | || || || || || || || || || ||||| | || Sbjct 656749 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 656690 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268 | |||||||||||| ||| || || ||||| | || |||||| | || ||| | Sbjct 656689 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATC-CGACGGTTCGA 656631 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || | || || || || ||||| | ||| || ||||| |||||||| || || Sbjct 656630 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTA 656576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923711199574