Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5380 430 2e-115 seq5351 145 1e-29 >seq5380 Length=870010 Score = 430 bits (476), Expect = 2e-115 Identities = 1229/1880 (65%), Gaps = 22/1880 (1%) Strand=Plus/Plus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 |||||||| ||||| ||||||| | ||| || || || || |||||||||||||| Sbjct 557585 CTTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCC 557644 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 ||||| || || |||| |||||| || || ||| || || || | || Sbjct 557645 GGTTTTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTTTGG 557704 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 ||||| | ||| || || | || || |||||||||||||| || || | || || || Sbjct 557705 CTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCGGC 557764 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62078 |||||| ||| | | ||| | |||||||| | ||||| |||| || | | | Sbjct 557765 CATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGACCTT 557824 Query 62079 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTGA 62135 || | ||| || || || | |||||||| || || ||| | | || ||||| | Sbjct 557825 CTGCGGGATGGCTTCGATGTTTTGAATGGAGCC-CCTGCTGGAAATTATTTGGTTCTTCA 557883 Query 62136 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62195 | ||||| | ||| || | || || | | || | | || | || || |||| Sbjct 557884 TATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCACTT 557943 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 ||||||| || |||| |||| | ||||||||||||| | |||||||| || | ||| | Sbjct 557944 GAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGATT 558003 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 | || || |||| ||| || ||||| |||||||| |||||||| ||||| | | | Sbjct 558004 CGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGAGT 558063 Query 62316 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 62375 | || | ||||| | |||| || || || | ||| | ||| || | || | Sbjct 558064 TCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTCGTTG 558123 Query 62376 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 62435 | || |||||||| ||||| || ||| |||| | Sbjct 558124 GCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTCCCTTCATAGG 558183 Query 62436 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62495 | |||||||| || || ||||||| || |||||||| ||||| || || ||||| |||| Sbjct 558184 TTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAAA 558243 Query 62496 TGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTA 62555 | ||||| || |||| || ||| | | ||||| || ||| | || | | Sbjct 558244 TAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGGAATCGCA 558303 Query 62556 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 |||||| || ||||| || || || ||||| || || || | || | ||||||| || Sbjct 558304 TGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTCTCAAAT 558363 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | || | | || || || | |||||||| || ||||| || || || || |||||| Sbjct 558364 TGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAAGATTTT 558423 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TATTA 62732 || | ||| || || || ||||| ||||| | | || | | | Sbjct 558424 TGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCGGGTGTGA 558483 Query 62733 CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792 | |||||||| | || | ||||||| || || || || | ||||| | | | | Sbjct 558484 CGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGT 558543 Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852 | | || || || |||||||| || || |||||||| || || | ||| || || || | Sbjct 558544 ACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGC 558603 Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912 |||| ||| || ||||| ||| | || || | ||| | || ||||| | ||| | | Sbjct 558604 TCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCT 558663 Query 62913 CTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTA-TAGATTTGTAT--CTCTTTT-C 62967 | |||||||| ||| | | ||| ||||||| | || | | || | | | || || | Sbjct 558664 CAATAATCGCGAACCACAAGGACT-GAGCCTTAACTACTCGGTTGGCACGACCCTCTTGC 558722 Query 62968 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGG 63027 || | | | ||| ||| ||| || ||||| |||||||||| || || || || Sbjct 558723 TCGTACTTCAAGT----ACAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGG 558778 Query 63028 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63087 |||| || |||||||| | ||||| || ||| ||| || |||||||| ||||| Sbjct 558779 GCATTTATGAGGACACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTCATGAAGAG 558838 Query 63088 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63147 ||| || ||||| | || |||| || | | | || || || ||||| || || Sbjct 558839 ATCGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTGTT 558898 Query 63148 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63207 || || || ||||||||| | | | ||| |||||||| || |||| ||| || || | Sbjct 558899 TTTCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAA 558958 Query 63208 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63267 | ||||| || ||| ||||||||||| | || | || ||| ||| | || || Sbjct 558959 GGCGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACCCT 559018 Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327 || ||| |||| | ||||||||| || |||||||| || | || || | || | || Sbjct 559019 CAGCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTGCCCTTTGC 559078 Query 63328 ACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 ||||| | | | ||| | | || || || |||||| ||| || || | ||||| Sbjct 559079 CCGAATGCAATGCACATTCA--GTCCAATACCACCTGCCGATTTTGAAATCATGGCGCAC 559136 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 | | | | | | |||||||| || || || ||||| | | || ||||| Sbjct 559137 TGCTCCACGGATTTGAAAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGAAACAC 559196 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| || | ||| | || | || ||| | || || || || |||||||| Sbjct 559197 GAAGACAACTGTGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAAAG 559256 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || || | |||||||| || || | ||| | || |||||| | || ||| Sbjct 559257 AATCGCTCGGACAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGTGGATT 559316 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || | ||| || ||||| ||||| || || || | ||| ||||||| ||| | || Sbjct 559317 CCAATTGCCACGCGCATCAACATATGTTGTGGGCGCTCAGCGATCTTTCCGTTCCTCTTA 559376 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 | ||| || ||| ||| | || ||||||||||||||||| ||| |||||| || || Sbjct 559377 AGCAAATATGATCGTTCGAGGGTCTTAAAACCAAAATAGTTATATCCAAAGTCGCGATCA 559436 Query 63686 TAAATAATAACCGAGTTGAG 63705 || || ||| ||||| || Sbjct 559437 TAGATTATAGAGGAGTTTAG 559456 >seq5351 Length=991022 Score = 145 bits (160), Expect = 1e-29 Identities = 480/743 (65%), Gaps = 15/743 (2%) Strand=Plus/Plus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 |||||||| |||||||| || || || |||||||| || || || || || | Sbjct 257258 ACTCCCATGCGCTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGC 257317 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 || || | |||||||| | || || || | || || || ||| || ||||| Sbjct 257318 GAAATCATCTCCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAAC 257377 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540 || | ||| | || || || || || ||||| ||||| || |||||||| Sbjct 257378 TCCACCAGCAAACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATG 257437 Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600 || ||||| || ||||| || || | || || || || || ||||| | ||||| || Sbjct 257438 CCGATAAGGTTCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCG 257497 Query 32601 GTTATAATAGATCTTACTGTTTCT---TCACTCGG-TGGATACAATAAATGTTTAAACAT 32656 || ||| | | || | | || || || | | | || | || | ||||| Sbjct 257498 CGAAT----GATTTCAATGATGCGCTCTCGCTTGGGTCGCTGCACAAGGTGCTGGAACAT 257553 Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || |||||||||||| || ||||||||||| || || | |||||||| || || Sbjct 257554 CAGCACTGCGAAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGT 257613 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||||| ||||| ||||| ||||| || ||||| || ||||| || || || || Sbjct 257614 CAGTCCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 257673 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 32836 ||| || ||||| || || |||||||| || | | ||| || | | |||| | || Sbjct 257674 GAAGATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTG--GCTGACTTG 257731 Query 32837 -----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 ||||| ||||| || ||||| || || ||||| || || || Sbjct 257732 GAGGAGATCCAGGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATG 257791 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || || || || | | | | ||| | ||||| || |||| | ||| Sbjct 257792 GCGTTGAACAGGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTG 257851 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||| ||||| || | ||| || ||||| || || || ||||||||||| | ||||| Sbjct 257852 TACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCT 257911 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 || ||||| || || | || || || | | ||| ||||| || || || || | Sbjct 257912 GTGATCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAG 257971 Query 33072 GCTGCAAAAAACGCCAATACATG 33094 ||||| || || ||||| || || Sbjct 257972 GCTGCGAAGAAGGCCAACACGTG 257994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633586426018400