Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4595 120 3e-22 seq4758 109 5e-19 seq5614 104 2e-17 seq5380 95.1 1e-14 seq5446 86.0 5e-12 >seq4595 Length=987418 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | || Sbjct 268039 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAGGTGGAGCCATCG 267980 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| | ||| |||||| ||||| || || ||||| || || || Sbjct 267979 GACACTATCGAGAATGTAAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 267920 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| |||||| || ||||||||| Sbjct 267919 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTGTCTGATTACAAT 267860 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || | ||||| ||||| | || | ||||||| Sbjct 267859 ATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGGAA 267811 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | || Sbjct 268267 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACTCTGGAGGTGGAGCCATCG 268208 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| |||||| ||||| || || ||||| || || || Sbjct 268207 GACACCATCGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 268148 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| |||||| || ||| ||||| Sbjct 268147 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGCACTTTGTCCGACTACAAC 268088 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || ||||| || || || || || Sbjct 268087 ATCCAGAAGGAATCGACCCTCCACTTGGT 268059 >seq4758 Length=893088 Score = 109 bits (120), Expect = 5e-19 Identities = 202/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048 ||||| ||||| |||||| ||||||||| ||| | | || || || || || Sbjct 498508 AACTTTCGCTTGCAGCCCTGATAGTTCATAAACCGAACCTTACCGAAGATAGCCCGCTCC 498567 Query 51049 TTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGA 51108 || | | |||| || | || | || ||||||||||| ||||||||| ||| || Sbjct 498568 TTCCAGCCCATGTCATGAATGCCTCCGATCGACCACATACATCCCACATAACCGTTGGGG 498627 Query 51109 TCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCT 51168 || ||||| || | ||||| | ||||| || | || || || ||| || || Sbjct 498628 TCTCGACCGTCGAGACTGTACTTGTCGTTAAGCAGGATCGCGTACTCCAGCGCTTGTTCC 498687 Query 51169 GCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATC 51228 | | | | |||||||| | || || |||||||||||||| || | | | |||||||| Sbjct 498688 GGAGTGGCAGTCCATTCAAGGATCTTTTTGGCCCAGTACATACGGAGGAAGCCGTGCATT 498747 Query 51229 TTGCCCTCGC-AACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 || ||||||| || || |||| || || |||||||||| || |||| ||| Sbjct 498748 TTTCCCTCGCGTACCAA-CTGCAACTGCGCGGAGTTCCACAGGTCATCGTAAGT 498800 >seq5614 Length=3457230 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || ||||||| | || || ||| | || Sbjct 1200929 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCC 1200988 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 1200989 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1201048 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || || | |||||| || ||| ||||| Sbjct 1201049 CAGCGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCCGACTACAAC 1201108 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || | ||||| || || Sbjct 1201109 ATCCAAAAGGAGTCTACTTTGCATTTGGTCCT 1201140 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || ||||||| | || || ||| | || Sbjct 1200701 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCC 1200760 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 1200761 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1200820 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || || | |||||| || || ||||| Sbjct 1200821 CAGCGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCGGACTACAAC 1200880 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || | ||||| || || Sbjct 1200881 ATCCAAAAGGAGTCTACTTTGCATTTGGTCCT 1200912 >seq5380 Length=870010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 656582 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAACCGTCG 656641 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 656642 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 656697 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| |||||| | ||||| Sbjct 656698 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGATTA 656757 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| | || || ||||| Sbjct 656758 TAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 656793 >seq5446 Length=1541693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || || || | ||||| || |||| || | || ||||| | Sbjct 1371321 ACCATGCAAATCTTCGTTAAAACCCTTACCGGCAAGACCATTACCTTGGAGGTGGAACCT 1371262 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| |||||| ||||| | || | ||| || || || || || || || || Sbjct 1371261 TCGGACACCATCGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGAATCCCCCCAGA 1371203 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || ||||||||||| | || |||| ||||| || ||| || Sbjct 1371202 TCAGCAGCGTCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACCCTGTCCGACTA 1371143 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || || ||||| Sbjct 1371142 CAACATCCAGAAGGAGTCGACCCTCCACTTGGTGCT 1371107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297612061510