Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5351 269 3e-67 seq5454 118 1e-21 seq5472 114 1e-20 seq4859 107 2e-18 >seq5351 Length=991022 Score = 269 bits (298), Expect = 3e-67 Identities = 561/827 (68%), Gaps = 14/827 (2%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 |||||||| ||||| || || || || || |||||||| || |||| || ||| | | Sbjct 257270 TGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGCGAAATCATCTCC 257329 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | | | || ||||||| ||| || |||| || || |||||| || || Sbjct 257330 ATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACCAGCAAA 257389 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | || || || || || || ||||| ||||||| ||| |||||||| || | ||| Sbjct 257390 CGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGTTC 257449 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || || || ||||| | ||| || | ||| || | || || || | |||||| Sbjct 257450 ACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCGCGAATGATTTCA 257509 Query 93044 ATTA----CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC-GCAA 93098 || | |||| | || ||| | | | || | | | | |||| | |||| || | Sbjct 257510 ATGATGCGCTCT-CGCTTGGGTCGCT---GCACAAGGTGCTGGAACATCA-GCACTGCGA 257564 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | ||| ||| | ||| ||||| | ||| |||| ||| ||| ||| || | || || | Sbjct 257565 AATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCA 257624 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 ||| ||||| ||||| ||||| || || || || || || || || || || |||| Sbjct 257625 TCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCTT 257684 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 ||||||| ||||| || | || || || | || || || || || | |||||| Sbjct 257685 CCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTGGCTGACTTGGAGGAGATCCAGG 257744 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | ||||| || || || ||| | || | |||||||| ||||| || |||| Sbjct 257745 ACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGCGTTGAACAGGT 257804 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | ||||||| || || ||| || |||||||| ||||| | || | ||||| || || | Sbjct 257805 ACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTACATCTCCGAGT 257864 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | || |||||||| || || ||||| |||||||| || | || || ||||||||||| | Sbjct 257865 GCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTGATCTGCACCT 257924 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 | || || | ||| || ||||| |||||||| || |||||||| ||||| || || | Sbjct 257925 CCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGCTGCGAAGAAGG 257984 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCAT-CTTTAAGCTTATCCCAATCGGATAGA 93577 |||| | ||| ||||| || ||| || | ||| |||| | ||| |||| || Sbjct 257985 CCAACACGTGCGAAATAAAGTGGCGCTCGTCGTCCTTCAAGC-GGTGCCAGTCGGTCAGG 258043 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || || || || || || || || ||||| || || || || || Sbjct 258044 TCCTTGGACAGGTCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGC 258090 >seq5454 Length=2883911 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 1256331 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 1256390 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 1256391 CGTGGGTTCGAACCCCACACCTGACAA 1256417 >seq5472 Length=700731 Score = 114 bits (126), Expect = 1e-20 Identities = 81/92 (88%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126260 TTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCG 126317 || |||| ||||||||||||| |||||||||||||||||||||| |||||||| | | Sbjct 378666 TTAACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAG 378725 Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| |||| Sbjct 378726 AGAGCGTGGGTTCGAACCCCACACCTGGCAAA 378757 >seq4859 Length=191382 Score = 107 bits (118), Expect = 2e-18 Identities = 74/83 (89%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325 ||||||||||||| |||||||||||||||||||||| |||||||| | | ||||||| Sbjct 188820 CAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGCGTG 188761 Query 126326 GGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||| ||| Sbjct 188760 GGTTCGAACCCCACACCTGGCAA 188738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556820747786960