Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5545 109 1e-18 seq5382 98.7 2e-15 seq5647 95.1 2e-14 seq5581 91.5 3e-13 seq5497 89.7 1e-12 seq5490 89.7 1e-12 >seq5545 Length=267088 Score = 109 bits (120), Expect = 1e-18 Identities = 290/443 (65%), Gaps = 0/443 (0%) Strand=Plus/Plus Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622 ||||| || |||||||| | |||||||| | ||||| ||||| ||| | | || Sbjct 143402 GAGCGCTCCATTCCCAGTCTCGTGGATGGTTTAAAGCCGGGTCAGCGCAAGGTGATGTTC 143461 Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682 || |||||| ||||| | || | ||||| || ||| | || |||| || Sbjct 143462 ACCTGTTTCAAGAGGAACGACAAGCGCGAGGTGAAGGTGGCCCAGCTGTCCGGTTCGGTG 143521 Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATG 218742 ||||||| || | |||||||||||| ||| |||||| ||||||| || Sbjct 143522 GCCGAAATGTCGGCCTACCATCACGGCGAGGTCTCGCTGCAGATGACCATTGTGAATCTG 143581 Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||| | ||||||||| |||||||| || |||||| || |||||||| ||| Sbjct 143582 GCCCAGAATTATGTGGGCGCGAACAACATTAATTTGCTGGAGCCGCGTGGTCAGTTCGGT 143641 Query 218803 TCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCG 218862 |||| | ||| || || ||| | || ||| | || || || || | ||||| Sbjct 143642 ACTCGATTGACGGGCGGCAAAGATTGCGCCAGTGCTCGTTACATTTTCACCCTGATGTCG 143701 Query 218863 CCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922 ||| | ||||| | | || | | ||| ||| ||| || | || | | |||| Sbjct 143702 CCCCTAACGCGACTCATCTTTCACCCTCTCGACGATCCGCTGCTCGACTACCAGGTGGAC 143761 Query 218923 GATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAAT 218982 ||||| ||| ||||| ||||||| |||| ||| || | |||| || ||| Sbjct 143762 GATGGCCAAAAGATCGAGCCGCTGTGGTATCTGCCCATTATCCCAATGGTGCTGGTCAAT 143821 Query 218983 GGTGCCAATGGTATCGGGACAGG 219005 || ||| |||| || || ||||| Sbjct 143822 GGAGCCGATGGCATTGGAACAGG 143844 >seq5382 Length=112986 Score = 98.7 bits (108), Expect = 2e-15 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 105043 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 104984 Query 142561 AGCCCCACATCGGGCAGAAGT 142581 |||||||| | |||| ||||| Sbjct 104983 AGCCCCACGTTGGGC-GAAGT 104964 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 97528 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 97587 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| | |||| |||| Sbjct 97588 CCCCACGTTGGGCGAAAGT 97606 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 94928 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 94869 Query 142564 CCCACATCGGGCAGA 142578 ||||| | |||| || Sbjct 94868 CCCACGTTGGGCGGA 94854 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 96424 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 96483 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 96484 AGCCCCACGTTGGGC 96498 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 64560 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 64501 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 64500 CCCACGTTGGGC 64489 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 95319 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 95378 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 95379 CCCACGTTGGGC 95390 >seq5647 Length=1983911 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1408408 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1408467 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 1408468 AGCCCCACGTTGGGC 1408482 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1408735 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1408676 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 1408675 AGCCCCACGTTGGGC 1408661 >seq5581 Length=1898396 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 952296 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 952237 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 952236 CCCCACGTTGGGC 952224 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 239269 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 239210 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 239209 CCCACGTTGGGC 239198 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 952859 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 952918 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 952919 CCCACGTTGGGC 952930 >seq5497 Length=1026797 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 433698 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 433757 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 433758 CCCACGTTGGGC 433769 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 434407 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 434466 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 434467 CCCACGTTGGGC 434478 >seq5490 Length=2738315 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 660445 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 660386 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 660385 CCCCGCAAGGGA 660374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027761024659114