Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4595 187 5e-42 seq5380 170 4e-37 seq5446 158 2e-33 seq5614 149 1e-30 seq5384 104 4e-17 >seq4595 Length=987418 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || ||||| || |||||||| |||||||| Sbjct 267585 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 267644 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| |||||||| || || | || || || || ||| Sbjct 267645 AAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 267704 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| ||||| || |||||||||||| | || || || Sbjct 267705 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACC 267764 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| |||||||| ||||| || |||||||| ||||| ||||||||| Sbjct 267765 TCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATT 267812 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || || || || |||||||| || ||||| Sbjct 268269 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 268328 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| |||||||| || || | || || || || ||| Sbjct 268329 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGA 268388 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| ||||| || |||||||||||| | || || || Sbjct 268389 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACC 268448 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 268449 TCCAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || || || || |||||||| || ||||| Sbjct 268041 CCACCACGGAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 268100 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| ||||| || || || | || || || || ||| Sbjct 268101 AAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 268160 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || ||||| || |||||||||||| | || || || Sbjct 268161 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACC 268220 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| ||||| || |||||||| ||||| |||||||| Sbjct 268221 TCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||||||||| || || | |||||||| | || ||||| || |||||||| |||||||| Sbjct 267356 TCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGA 267415 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | || || || | ||||| |||||||| || | | || || || || || Sbjct 267416 CAAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGG 267475 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || |||||||| || || || ||||| ||| ||| || ||||| | | ||||| Sbjct 267476 GATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTAC 267535 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||||||||| || |||||||| ||||| |||||||| Sbjct 267536 CTCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || ||||| || |||||||| || ||||| Sbjct 268497 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 268556 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| |||||||| || || | || || || || ||| Sbjct 268557 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 268616 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| ||||| || || || || |||||| || || | | || || Sbjct 268617 ATTCCCTCCTTGTCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACC 268676 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||| ||| ||||||||||| || | |||||| || || ||||||||| || Sbjct 268677 TCCAGGGTAATGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 268727 >seq5380 Length=870010 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| | |||||||| || || ||||||||||| ||| Sbjct 656808 CCACCACGAAGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAG 656749 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || || || || ||| Sbjct 656748 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 656689 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| || ||||| ||||| || || | | ||| || Sbjct 656688 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 656629 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || |||||||||||||| ||||| |||||||| Sbjct 656628 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 656582 >seq5446 Length=1541693 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || || ||||| || |||||||| || ||||| Sbjct 1371092 CCACCACGCAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1371151 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || |||||||| ||||| | || || || || || Sbjct 1371152 AGGGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 1371211 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| ||||| || |||||||||||| | | ||| || Sbjct 1371212 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACC 1371271 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| || || || ||||| || ||||| || ||||| Sbjct 1371272 TCCAAGGTAATGGTCTTGCCGGTAAGGGTTTTAACGAAGATTTGCAT 1371318 >seq5614 Length=3457230 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || | || ||||| ||||||||||| || || || Sbjct 1200699 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200640 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || | || || ||||| || ||| Sbjct 1200639 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200580 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||| ||||| || | | ||| || Sbjct 1200579 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACC 1200520 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || | |||||||| || |||||||| Sbjct 1200519 TCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCAT 1200473 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || | || ||||| ||||||||||| || ||||| Sbjct 1201155 CCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 1201096 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || | || || ||||| || ||| Sbjct 1201095 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1201036 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||||| ||| ||||| || | | || || Sbjct 1201035 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACC 1200976 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || | |||||||| || |||||||| Sbjct 1200975 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || | || ||||| ||||||||||| || || || Sbjct 1200927 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200868 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || | || || ||||| || ||| Sbjct 1200867 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200808 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||||| ||| ||||| || | | || || Sbjct 1200807 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACC 1200748 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || | |||||||| || |||||||| Sbjct 1200747 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 >seq5384 Length=1708600 Score = 104 bits (114), Expect = 4e-17 Identities = 177/255 (69%), Gaps = 10/255 (4%) Strand=Plus/Minus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| | ||| ||||||| || || || || || | ||||| ||||||||||| |||| Sbjct 1277146 CTGCAACATCATCCACATGGCCTCCACGTAATCACTGGCATGTCCCCAATCGCGTTTTGA 1277087 Query 268306 GTCCATGTTCCCGAGGAACAGGCATT---TCTGCTT--GCCGAGCTTCACGCGTGCAAGA 268360 ||| | || || || | | | ||||||| || || || ||||| | Sbjct 1277086 GTCTAGATTACCCAGCTCAAAATACTCCATCTGCTTAAGCAGAATTTT-----TGCAACA 1277032 Query 268361 CCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAG 268420 | || |||||||| | ||| || || ||||||| | | | || ||||||||||||||| Sbjct 1277031 CTTCGTGTGATTTTCCTGGTTACAAAGTTCTCGCCTCTTCGTGGACTCTCGTGGTTGAAG 1276972 Query 268421 AGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTAT 268480 ||||| || ||||| || ||||| || ||||| |||||||| | || |||| | Sbjct 1276971 AGGATTCCATTGCAAGCATACATGTTGTAGGCCTCTCGGTAGTTTATTACGATCCAAAAG 1276912 Query 268481 GCAAACATCTTTGCA 268495 | ||||||||||| Sbjct 1276911 CCGTACATCTTTGCA 1276897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921556112308880