Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq5469 82.4 2e-12 >seq5469 Length=1487604 Score = 82.4 bits (90), Expect = 2e-12 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 3343 CGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTG 3402 || |||||||| | |||| || || || |||||||||||||| || ||| || Sbjct 1102505 CGGGTCTTTCCGAAGGTCACCAAGTGCACGTTCCACAAATACGGTCCCTCCGGCAATGTG 1102446 Query 3403 GAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATT 3462 | || | ||| || || ||| | || || ||| | |||||||||||||||||| | Sbjct 1102445 CAGAAGTTCGACGGTCTGTGCGTGCTGCCCCTTAACATTGTCAACGAGAAGATCTACGTG 1102386 Query 3463 TTCCTCTGGTTCTGGTTC 3480 ||||| |||||||||||| Sbjct 1102385 TTCCTGTGGTTCTGGTTC 1102368 Score = 82.4 bits (90), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| |||||| | || || || ||| | || |||| ||||||||| Sbjct 1128047 TGCACCTTCCACAAGTACGGTGCCTCCGGGTCGCTGCAGAAGCACGACTCCCTCTGCATC 1128106 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCT 3481 || ||| |||| | || |||||||||| ||| | ||| ||||||||||||||| Sbjct 1128107 CTGCCGCTGAACATCGTGAACGAGAAGACGTACGTGTTCATCTGGTTCTGGTTCT 1128161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479214579000