Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5380 109 5e-19 seq4595 104 2e-17 seq5446 96.9 3e-15 >seq5380 Length=870010 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||| | || || || | || || || || |||||||| ||||| Sbjct 656809 ACCACCACGAAGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGA 656750 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || ||| |||||| || || || |||||| |||| |||||||| || || ||||| Sbjct 656749 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 656690 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 656689 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 656630 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || ||||| || || || || || || |||||||| Sbjct 656629 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 656582 >seq4595 Length=987418 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | || || || || || |||||||||||| Sbjct 267582 ATGCCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCG 267641 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||||||||| || || || ||| |||| |||||||| || || ||| Sbjct 267642 GACAAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGA 267701 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || |||||| || | | || | |||||| | | || Sbjct 267702 GGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCC 267761 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || |||||||| || || || || |||||||| Sbjct 267762 ACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 267811 >seq5446 Length=1541693 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||| ||||| || | | || || || | || || || || || |||||||| || Sbjct 1371088 AATACCACCACGCAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 1371147 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | || || || ||| || || ||||| || ||| ||||||||||||| || || || Sbjct 1371148 GGACAGGGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGG 1371207 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || || || || || |||||| || | | || | |||||| | | ||| Sbjct 1371208 GGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTC 1371267 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || |||| ||| | || |||||||| || ||||| || || || ||||||| Sbjct 1371268 CACCTCCAAGGTAATGGTCTTGCCGGTAAGGGTTTTAACGAAGATTTGCATGG 1371320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420104937287448