Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5351 340 3e-88 seq5380 242 7e-59 >seq5351 Length=991022 Score = 340 bits (376), Expect = 3e-88 Identities = 574/824 (70%), Gaps = 29/824 (4%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| |||||| | |||||| |||||||| | ||| |||| ||| | ||| Sbjct 258076 CTGGACCGTGGAGGAGGTGGACCTGTCCAAGGACCTGACCGACTGG----CACCGCTTGA 258021 Query 42395 -GAACGAAAAG-------TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGAC 42446 | |||| || || || | || | | ||||||||||||| ||||| || Sbjct 258020 AGGACGACGAGCGCCACTTTATTTCGCA----CGTGTTGGCCTTCTTCGCAGCCTCCGAT 257965 Query 42447 GGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCG 42506 ||||| ||||||||||| |||| | |||| | ||||||||| | ||||| Sbjct 257964 GGCATTGTCAATGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGATCACAGAGGCC 257905 Query 42507 CGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAA 42566 ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||| Sbjct 257904 CGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTG 257845 Query 42567 CTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAG 42626 ||| || |||| ||||||| ||||| | |||| | |||||||| ||||| || Sbjct 257844 CTGATCGACACATACATCCGCGATCCGCACCAGCGAGAGTACCTGTTCAACGCCATCGAA 257785 Query 42627 ACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC----GAGAGTCC 42682 |||||||| | ||| ||||| |||||||| | ||||||| |||| Sbjct 257784 ACGATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCCATGTCCTGGATCTCCTCCAAGTC- 257726 Query 42683 CGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC 42742 | |||| ||||| ||| | | | |||||| ||||||| || |||||||||||| Sbjct 257725 --AGCCAAC-TTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAAGGCATCTTCTTCAG 257669 Query 42743 GGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCT 42801 ||| |||||||||||| |||||||| ||| || ||| | |||||| ||||| |||| Sbjct 257668 CGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGAGGCCT-GATGCCGGGACTGACCT 257610 Query 42802 TCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 |||| ||||| || ||| ||||||||||| |||||| | || || || || ||| Sbjct 257609 TCTCCAACGAGCTGATCTCAAGGGACGAGGGTCTGCATTGCGATTTCGCAGTGCTGATGT 257550 Query 42862 TCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGG 42921 || | ||||| ||| ||| | ||||| || | ||||| || | Sbjct 257549 TCCAG---CACCTTGTGCAGCGACCCAAGCGAGAGCGCATCATTGAAATCATTCGCGATG 257493 Query 42922 CCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGA 42981 | |||| || ||| ||||||||||||| | | ||||| ||| ||| ||||||||| Sbjct 257492 CGGTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCAGTGAACCTTATCGGCATGA 257433 Query 42982 ACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGG 43041 | ||| || |||| |||| ||| ||| ||| ||||||| | | ||| || ||| Sbjct 257432 ATTGCGATCTGATGTCGCAGTATATCGAGTTCGTGGCCGACCGTTTGCTGGTGGAGTTGG 257373 Query 43042 GTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGG 43101 | | | |||||||||| | |||||| |||| ||||||| || ||| ||| Sbjct 257372 GCGTTGGAAAGATCTACAACACCAAGAACCCCTTTAACTTCATGGAGATGATTTCGCTGG 257313 Query 43102 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | |||||||| ||||||||||||||| || | ||| |||||| Sbjct 257312 ACGGCAAGACAAACTTTTTCGAGAAGAAGGTTGGCGAATACCAG 257269 >seq5380 Length=870010 Score = 242 bits (268), Expect = 7e-59 Identities = 988/1535 (64%), Gaps = 53/1535 (3%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGG-GTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 ||||| ||||||| | || || | | |||| ||| | | ||| |||||||| ||||| Sbjct 557590 CCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTG-TGCGCAGATAGTACATTCCGGTT 557648 Query 243794 TTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 || || ||| ||||| || | ||| |||| ||| ||||| || || ||| Sbjct 557649 TTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTT-----TCCGTAG-TTT 557702 Query 243854 GGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGC 243913 || || || ||| || ||||| ||||||||| || |||| ||| | | || Sbjct 557703 GGCTCTGCC----ACATGAAT--GTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGA 557756 Query 243914 TCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGC 243973 || |||||||| | || |||| ||| || || || | || ||||| | | | Sbjct 557757 TCAGCGGCCATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAA-GATC 557815 Query 243974 TTG-AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGCT 244031 | | | | || |||| |||||||||| || | |||||| || |||| || | | Sbjct 557816 TCGGACCTTCTGCGGGATGGCTTCGATGTTTTGAATGGAGCCCCTGCTGGAA-ATTATTT 557874 Query 244032 GGGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAGCGCCTCGACCAGGTGCCTG 244090 || | ||| | ||||| ||||| | |||| | || | |||| || || || | Sbjct 557875 GGTTCTTCATATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAG-TGATGG 557933 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || ||||| ||||| || || ||||| || || | ||| | || | | |||| Sbjct 557934 TTGACCACTTGAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGC 557993 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||||||||| ||||| || || ||||| ||||| || | ||| Sbjct 557994 TCGAAAGATTCGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACA 558053 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTCCC 244268 ||||| |||||| || |||||| ||| ||| || || | || | | |||||||| Sbjct 558054 AGCAGGGAGTTCCTGACACCGTGCTTCTTGATC--GACTCCTTCAGTTTCTGCCAGTCCC 558111 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 ||| | || | |||||| | |||||||||| ||||||| | ||||| | Sbjct 558112 ACAGGTTCGT-------TGGCGTTTT--GTCCCACATGTCGTACTGCAGAATACCCTTAC 558162 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCT 244388 | |||||||| || || ||||| ||| ||||| || || ||||||| ||| || Sbjct 558163 TTACGGGGCTCCCTTCATAGGTTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGG 558222 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 | || | ||| ||||||| || || || || ||| || |||| | || | Sbjct 558223 CCTCCAAAGCGCCGTAGTAAATAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTT 558282 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 | | |||||| | ||| | || ||| |||| || | ||||| || ||||||| Sbjct 558283 CACTTTCATAGGGGAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGC 558342 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 | | ||| | |||| | ||||| | | || || |||| ||| ||| |||| | Sbjct 558343 CCACGGGGCGATGTCTCAAATTGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATAT 558402 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | |||||| || || ||||| | | | || || || || || | Sbjct 558403 CGATTATCTTGTTAAGATTTTTGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAAT 558462 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 ||||| | | ||||| ||| | || ||| ||| ||||||| | | Sbjct 558463 CGTAC------GTCTTCTCGG-----GTG----TGACGAACATGTTAAGGGCGATGGATG 558507 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 ||| |||||| || || | ||| || | | ||||| || || || ||||| |||| Sbjct 558508 CCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGTACTCTACGATTTCTGTGCAAAGGT 558567 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 | ||||||||||| ||||| | | ||| || ||| ||| ||||||||| || || Sbjct 558568 TGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCTTTAA 558627 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCC 244867 ||||||| | || || || || | ||| || | | | ||| | ||| | | | Sbjct 558628 AGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCTCAATAATCGC-GAACCACAAGGAC 558686 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 |||||| || | | || |||||| |||||| |||||| || Sbjct 558687 TGAGCCTTAACTACTCGGTTGGCACGACCCTCTTGCTCGTACTTCAAGTACAGCTTTTCA 558746 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 || ||| |||||| || |||| ||||||||||| || |||||||| ||| Sbjct 558747 AATTCGTCGCCCCAAACATCGTGAAGGCCGGGGCATTTATGAGGACACATGAGGGACCAA 558806 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || || | ||| || | | ||||||||| ||||| ||||| | ||| | ||| | | Sbjct 558807 TCCTCGTTGGCCTCTACACGTTTCATGAAGAGATCGGGTATCCACAAGGCGTAGAATAAG 558866 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | | | | ||| ||| || ||||| ||| | ||||| | || || ||||| Sbjct 558867 TCGCGTGCACGATTCTCTTCCTTTCCGGTGTTTTTCTTGAGCTCGAGGAACTCGAAGACA 558926 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 || ||||| ||||||| ||| | ||| | |||||| || |||||| ||||||||| Sbjct 558927 TCCGAATGCCATGGCTCCAGGTAAATAGCAAAGGCGCCAGGACGCTTGCCGCCTCCCTGA 558986 Query 245168 TCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 |||| ||| | | | || ||| |||| | ||| | || || | || || ||| Sbjct 558987 TCCA-CATACCGTGCAACGTTGTTAAAGACCCTCAGCATGGGAACCAGACCATTGGAGGT 559045 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCC-TTGCCC 245260 ||| |||||||| || ||| |||| |||||| Sbjct 559046 GCCATTGGTGCCGCAAATCGAGGTGCCCTTTGCCC 559080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944271278403040