Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5466 178 1e-39 >seq5466 Length=1802269 Score = 178 bits (196), Expect = 1e-39 Identities = 472/708 (67%), Gaps = 20/708 (3%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193 |||||||||||||||||||||||||||||| | ||||| || | || ||| | || Sbjct 949187 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCTCCTTCAGTGGTTCCACGTG-GTTCAGATA 949245 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 || ||| || || |||| ||||| | || || || || | ||||| || ||||| || Sbjct 949246 GACGTGCGCGTCACCCAGGGTGTGCACGAAGTCGCCCGGCTTGAGACCCGTTACATGGGC 949305 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 || ||| || || | |||| ||| || || ||||| || || |||| |||||||| Sbjct 949306 AATCATGTAGGTGAGCAGGGCGTAGGACGCGATATTAAAGGGTACGCCCAGGCCCATGTC 949365 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG------TCAGCTACATAAAATTG 20367 | |||||| |||||||| |||||||| |||||| | | || || || || Sbjct 949366 GGCACTCCTCTGGTACAGCTGGCAGGAAAGTTCACCGCGCGTTTGGGAAACGTAGAACTG 949425 Query 20368 ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACA 20427 | | || || || ||||| ||||| || | |||| ||| |||||||| | Sbjct 949426 CGCCAGGCAATGGCACGGAGGAAGAGCCATTTTCGGTATGTCCAACGGATTCCACGCCGA 949485 Query 20428 CATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCA-CA-ATGTACGACAAT 20485 ||| ||||| | || || ||| || || || || || | || ||| || ||| Sbjct 949486 CATGATGATGCGCCTGTCCGACGGGTTGTTCTTAATGGTGTCGATCACATG-GCG-CAAC 949543 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTG 20544 ||||| | |||| |||||| ||||| | || | || | ||||| ||||||||||||| Sbjct 949544 TGGTCGACGCCCTTGCCTGTGTAGTCGTCGTCGCAGGTTC-CGTACTCCGCCCCAAAGTG 949602 Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCG 20604 | ||||||||| || || || ||||||| ||| ||| | | | || | || | Sbjct 949603 GCGCCACTGGAAGCCATACACCGGTCCCAGATCACCCACGGCGCGCTCCGTGTGTCCCAG 949662 Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTGAA- 20662 | | | |||||||| || | || || | ||||| || | || | || | || | Sbjct 949663 CTTGTCTAGGAACTCTCTAGTGCAGTTCTCATCCCAGATGTGAACGTTCTTCGCCTGCAG 949722 Query 20663 -AGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCG 20721 |||| ||| ||| || | ||| || ||||| |||||||| | | || || || Sbjct 949723 TAGCT---TGGCGTCCGTCTTGCCCGCCACGAACCAGAGCAGCTCCTCGGCCACCCCGCG 949779 Query 20722 CCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTG 20781 | || || ||||| || || || || ||||| |||| || || ||| ||| Sbjct 949780 AAAGAAGACGCGCTTGGTCGTCAGCAAAGGAAAAGAATCCCTCAAGTTAAACCGCATCTG 949839 Query 20782 CATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCGATC 20829 ||||||| | || || ||||| | | || ||||| | ||| || Sbjct 949840 ACTGCCAAAGACGGATAGAGTGCCAACCCTTGTCCGGTCCATTCGCTC 949887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441341054261360