Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq229 100 2e-16 seq4134 98.7 8e-16 seq266 96.9 3e-15 >seq229 Length=1343 Score = 100 bits (110), Expect = 2e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 115531 CATGTATTGCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACCA 115589 |||||||| |||||||||||||| |||||||||||||||| | |||||||||||||| Sbjct 571 CATGTATTAGTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACCA 512 Query 115590 AAACTGATATATTGAGCCATTCGTGGTATC 115619 |||||||||| |||||| || | ||| || Sbjct 511 TAACTGATATAATGAGCCTTTTGCGGTTTC 482 Score = 100 bits (110), Expect = 2e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 114334 CATGTATTGCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACCA 114392 |||||||| |||||||||||||| |||||||||||||||| | |||||||||||||| Sbjct 571 CATGTATTAGTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACCA 512 Query 114393 AAACTGATATATTGAGCCATTCGTGGTATC 114422 |||||||||| |||||| || | ||| || Sbjct 511 TAACTGATATAATGAGCCTTTTGCGGTTTC 482 >seq4134 Length=1009 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| ||||||||| |||||| | ||||||||||||| Sbjct 282 CATGTATTAGCTCTAGAATTACCACAGTTATCCAATTAACTGTTAACGATCTAAGGAACC 223 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 222 ATAACTGATATAATGAGCCTTTTGCGGTTTC 192 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| ||||||||| |||||| | ||||||||||||| Sbjct 282 CATGTATTAGCTCTAGAATTACCACAGTTATCCAATTAACTGTTAACGATCTAAGGAACC 223 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 222 ATAACTGATATAATGAGCCTTTTGCGGTTTC 192 >seq266 Length=1231 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAA-GTAACTGAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| ||||||||| ||||||| | |||||||||||| Sbjct 273 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAAGTAACTGTTAACGATCTAAGGAAC 332 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || |||||||||| |||||| || | ||| || Sbjct 333 CATAACTGATATAATGAGCCTTTTGCGGTTTC 364 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAA-GTAACTGAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| ||||||||| ||||||| | |||||||||||| Sbjct 273 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAAGTAACTGTTAACGATCTAAGGAAC 332 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || |||||||||| |||||| || | ||| || Sbjct 333 CATAACTGATATAATGAGCCTTTTGCGGTTTC 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397034555254708