Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5380 138 3e-27 seq4595 125 2e-23 seq5614 113 1e-19 >seq5380 Length=870010 Score = 138 bits (152), Expect = 3e-27 Identities = 176/240 (73%), Gaps = 7/240 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || || | || | ||| || || || || ||||| || | | Sbjct 656808 CCACCACGAAGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAG 656749 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || ||||||||||||||||| ||| ||||| Sbjct 656748 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGA---TCTGGA 656692 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| ||||| || || ||||| || ||||| |||| ||| || ||| Sbjct 656691 GGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCG 656632 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 || || || ||||| ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct 656631 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG-TATTC 656573 >seq4595 Length=987418 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| | ||||| ||||| || | ||| || || ||||| Sbjct 267393 TCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAA 267452 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| ||||| |||||| || || ||||||||||| || |||||| Sbjct 267453 ATCAAACGCTGCTGA---TCTGGAGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACG 267509 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || || ||||| || || ||||| || || ||||| || ||||| Sbjct 267510 TTCTCAATAGTGTCCGACGGCTCTACCTCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTC 267569 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 267570 ACGAAGATCTGCAT 267583 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| | |||||||| ||||| | || || || || || Sbjct 268076 TTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAA 268135 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||||||| || |||| || ||||| || || ||||||||||| || ||||| Sbjct 268136 GATCAGACGCTGCTG---ATCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTCAC 268192 Query 288399 GTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || | || |||| || || || || ||||| ||||| |||||||| || Sbjct 268193 ATTCTCGATGGTGTC---CGATGGCTCCACCTCCAGAGTGATGGTCTTTCCGGTCAGGGT 268249 Query 288456 CTTGACGAATATCTGCAT 288473 ||| ||||| |||||||| Sbjct 268250 CTTCACGAAGATCTGCAT 268267 Score = 118 bits (130), Expect = 3e-21 Identities = 146/197 (74%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || | || ||||| || ||||| | || || || |||||| Sbjct 267849 TCCTTCTGGATATTGTAATCAGACAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAG 267908 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| || ||||| || || ||||||||||| || || || Sbjct 267909 ATCAGACGCTGCTG---ATCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTTACA 267965 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || |||| || |||| || || || || ||||| ||||| || ||||| ||| Sbjct 267966 TTCTCGATAGTGTC---CGATGGCTCCACCTCCAGAGTGATGGTCTTTCCAGTCAGGGTC 268022 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 268023 TTCACGAAGATCTGCAT 268039 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| | |||||||| ||||| | || || || |||||| Sbjct 267621 TCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAG 267680 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| || ||||| || ||||| || || || || ||||| Sbjct 267681 ATCAGACGCTGCTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACA 267737 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || || || ||||| ||||| |||||||| ||| Sbjct 267738 TTCTCGATGGTGTC---CGATGGCTCCACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTC 267794 Query 288457 TTGACGAATATCTGCATT 288474 || ||||| ||||||||| Sbjct 267795 TTCACGAAGATCTGCATT 267812 Score = 111 bits (122), Expect = 4e-19 Identities = 150/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | || || ||||| || | || || || |||||| Sbjct 268533 TCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAG 268592 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| || ||||| || || ||||| ||||| |||||||| Sbjct 268593 ATCAGACGCTGCTG---ATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTGGCTTTCACA 268649 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || || || || || || || |||| ||||| Sbjct 268650 TTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATGGTTTTTCCAGTCAAGGTCTTC 268709 Query 288460 ACGAATATCTGCATTATG--TTATTCT 288484 || || ||||||||| || ||||||| Sbjct 268710 ACAAAGATCTGCATTTTGGATTATTCT 268736 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| | || || ||||| || | || || || ||||| Sbjct 268304 TTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 268363 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||||||||| || |||| || ||||| || ||||| || || || || ||||| Sbjct 268364 AATCAGACGCTGCTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCAC 268420 Query 288399 GTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || | || |||| || || || || ||||| ||||| ||||| || || Sbjct 268421 ATTCTCGATGGTGTC---CGATGGCTCCACCTCCAGAGTGATGGTCTTTCCGGTGAGGGT 268477 Query 288456 CTTGACGAATATCTGCAT 288473 ||| ||||| |||||||| Sbjct 268478 CTTCACGAAGATCTGCAT 268495 >seq5614 Length=3457230 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || ||||||||||| || | || || || || ||| Sbjct 1200663 TCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAG 1200604 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || |||||| || || || || |||||||| || || || ||| Sbjct 1200603 ATCAATCGCTGCTG---GTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 1200547 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | ||| || || | ||||| ||||| ||||| | ||||||| Sbjct 1200546 TTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTG 1200487 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 1200486 ACAAAGATCTGCAT 1200473 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || ||||||||||| || | || || || || ||| Sbjct 1201119 TCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAG 1201060 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || |||||| || || || || |||||||| || || || || Sbjct 1201059 ATCAATCGCTGCTG---GTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACA 1201003 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| ||||||| ||||||| Sbjct 1201002 TTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTG 1200943 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 1200942 ACAAAGATCTGCAT 1200929 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || ||||||||||| || | || || || || ||| Sbjct 1200891 TCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAG 1200832 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || |||||| || || || || |||||||| || || || || Sbjct 1200831 ATCAATCGCTGCTG---GTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACA 1200775 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| ||||||| ||||||| Sbjct 1200774 TTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTG 1200715 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 1200714 ACAAAGATCTGCAT 1200701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179567432191212