Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5351 136 5e-27 seq5545 107 2e-18 >seq5351 Length=991022 Score = 136 bits (150), Expect = 5e-27 Identities = 267/387 (69%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCC 125815 ||| || |||||| ||||||||| ||||||||||| |||||| ||| || || ||||| Sbjct 257272 GTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCC-AGC-GAAATCATCTCC 257329 Query 125816 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || | ||| |||||||| | ||| | || || || || | || || | | Sbjct 257330 ATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACCAGCAAA 257389 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | ||| |||| || |||| |||||| || | ||||| ||||| ||||| Sbjct 257390 CGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGTTC 257449 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 ||| || || || || |||| ||| |||||| |||| || || || | ||| Sbjct 257450 ACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCGCGAATGAT---T 257506 Query 125996 TGAATGGTG---TCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAA 126051 | |||| || || | |||| ||| ||| || || ||| | ||| || || Sbjct 257507 TCAATGATGCGCTCTCGCTTGGGTC-GCTGCACAAGGTGCTGGAACATCAGCACTGCGAA 257565 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || || ||||||||||| | ||||| || || || |||||| |||||| ||||| Sbjct 257566 ATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCAT 257625 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAAT 126138 || || |||||||||| ||||||||| Sbjct 257626 CAGGCCTCGCTTCTTCAGCCAGAAAAT 257652 >seq5545 Length=267088 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 ||||||||| ||| | | || || || || ||||||| ||| || || | ||| || || Sbjct 143665 ATCTTTGCCGCCCGTCAATCGAGTACCGAACTGACCACGCGGCTCCAGCAAATTAATGTT 143606 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025 ||| | |||| || | | ||||| || ||||| || ||| || || ||||| || | Sbjct 143605 GTTCGCGCCCACATAATTCTGGGCCAGATTCACAATGGTCATCTGC-AGCGAGACCTCGC 143547 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 ||||||||||||||||| | || || || | | | || ||| |||||||||| ||| Sbjct 143546 CGTGATGGTAGGCCGACATTTCGGCCACCGAACCGGACAGCTGGGCCACCTTCACCTCGC 143487 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTG 172128 |||| |||| | | ||| || | |||| ||||| | ||| Sbjct 143486 GCTTGTCGTTCCTCTTGAAACAGGTGAACATCACCTTGCGCTG 143444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597310635342320