Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5380 201 1e-46 >seq5380 Length=870010 Score = 201 bits (222), Expect = 1e-46 Identities = 922/1449 (64%), Gaps = 39/1449 (3%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 |||||| |||||||||||||||| |||| | | ||||||||| ||| || |||||| Sbjct 559210 CCACAGTTGTCTTCGTGTTTCCTCTTGACCATGACGGCCGACTCGATCGAGGGCATTTTC 559151 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | | || | || || | || ||||||| || || || || || | | ||| Sbjct 559150 AAATCCGTGGAGCAGTGCGCCATGATTTCAAAATCGGCAGGTGGTATTGGACTGAATGTG 559091 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 || | | || || | ||| ||| || |||| ||||||||||||||||| || || Sbjct 559090 CATTGCATTCGGGCAAAGGGCACCTCGATTTGCGGCACCAATGGCACCTCCAATGGTCTG 559031 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||||| ||||||| ||||||| || || || ||||| ||||| || || | | Sbjct 559030 GTTCCCATGCTGAGGGTCTTTAACAACGTTGCACGGTATGTGGATCAGGGAGGCGGCAAG 558971 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | || | || || | || || ||||| ||||| |||| || | ||| || Sbjct 558970 CGTCCTGGCGCCTTTGCTATTTACCTGGAGCCATGGCATTCGGATGTCTTCGAGTTCCTC 558911 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTC 94287 || || || ||| ||| || || | | | || | ||| | |||||||| | Sbjct 558910 GAGCTCAAGAAAAACACCGGAAAGGAAGAGAATCGTGCACGCGACTTATTCTACGCCTTG 558851 Query 94288 TGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGT 94347 ||| | || || || || |||||||| || ||| ||| | ||| || | ||| Sbjct 558850 TGGATACCCGATCTCTTCATGAAACGTGTAGAGGCCAACGAGGATTGGTCCCTCATGTGT 558791 Query 94348 CCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCG-CG-TTTTGAAGACTTGTATG 94405 || || |||| ||||| || ||| ||||| || || || |||||| | |||| Sbjct 558790 CCTCATAAATGCCCCGGCCTTCACGATGTTTGGGG--CGACGAATTTGAAAAGCTGTA-- 558735 Query 94406 CTCG--TTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGA 94463 || | ||||| |||| |||| || | | ||| | ||||| Sbjct 558734 CTTGAAGTACGAGCAAGAGGGTCGTGCCAACCGAGTAGTTAAGGCTCAGTCCTTGTGGTT 558675 Query 94464 TCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGT 94523 ||| | || | |||||||| ||||| | || || || | || || || | Sbjct 558674 CGCGATTATTGAGGCGCAGGTGGAAACGGGAAATCCTTATATGCTCTTTAAAGATGCCTG 558615 Query 94524 CAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGA 94583 |||| ||| |||||||||| | | || |||||| || || || ||||| || Sbjct 558614 CAACCGGAAGAGCAACCAGCAGAATGTTGGCACTATCAAGTGCAGCAACCTTTGCACAGA 558555 Query 94584 GATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCT 94643 || || ||||| || | || || |||||||| || || ||| ||| |||||| ||| Sbjct 558554 AATCGTAGAGTACTCTGCGCCAGATGAGATTGCAGTATGCAACTTGGCATCCATCGCCCT 558495 Query 94644 GTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TG 94702 || ||||| | || || | ||| |||| | || | || Sbjct 558494 TAACATGTTCGT--------CACACCCGAGAA----GACGTACGATTTCAAGAAACTAAA 558447 Query 94703 TGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACC 94762 ||| || | || || | | || || |||| | ||||||| | |||| || | Sbjct 558446 AGAAGTTACCAAGACGG-TCACCAAAAATCTTAACAAGATAATCGATATAAACTATTATC 558388 Query 94763 CCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGG 94822 || | |||||||| |||| || || ||| ||||| ||| | |||||||| || |||| Sbjct 558387 CCCTGCCGGAGGCAAAGAAATCCAATTTGAGACATCGCCCCGTGGGCATCGGAGTTCAGG 558328 Query 94823 GTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTT 94882 ||||||| ||||| || | | ||||| | ||||| || || || || | || Sbjct 558327 GTTTCGCTGACGCCTTGATTCTCATGCGATTCCCCTATGAAAGTGAAGAAGCTGGTCTTT 558268 Query 94883 TGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTG- 94941 ||||| | | ||||| |||| ||||| ||||| || || | | ||| ||| Sbjct 558267 TGAATCAGCAGATATTTGAAACTATTTACTACGGCGCTTTGGA-------GGCCAGTTGT 558215 Query 94942 --GCCAGATCGGA-CGGCGGGCCACACGAATCGT-TCCGCGGATCGCCCTTGGAACAGGG 94997 || | | || | || ||| ||||| | | | ||| | || | | | |||| Sbjct 558214 GAGCTGGCTGAGATTGATGGTCCATACGAAACCTATGAAGGGAGCCCCGTAAGTA-AGGG 558156 Query 94998 CATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCT 95055 ||| | |||| |||| | |||| | ||| || |||| |||||| ||| || Sbjct 558155 TATTCTGCAGTACGACATGTGGGACAAAACGCCAACGAACCTGTGGGACTGGCAGAAACT 558096 Query 95056 CTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCC 95115 | | | || | | || |||||||| | ||| | ||||||||||| || |||||| Sbjct 558095 GAAGGAGTCGA--TCAAGAAGCACGGTGTCAGGAACTCCCTGCTTGTGGCTCCTATGCCC 558038 Query 95116 ACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAAC 95175 || || || || || ||||| | ||||||||||| || ||||| || | || | || Sbjct 558037 ACTGCATCTACTGCCCAGATTATGGGCAACAACGAATCTTTCGAGCCGTATACGACTAAT 557978 Query 95176 GTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGG 95235 | |||| || || || || |||| ||||| | || ||||| | ||| | | || Sbjct 557977 ATTTACACTAGACGAGTTCTGTCCGGCGAATTTCAAGTGGTCAACCATCACTTGTTGAGG 557918 Query 95236 GACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAAC 95295 |||||||| ||| |||||| || | | ||||||||| | | | || Sbjct 557917 GACCTGACTGAATTGGACTTGTGGGACGATGATATGAAGAACCAAATAATTTCCAGCAGG 557858 Query 95296 GGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTG 95355 |||||| | || |||||| || ||| || | || | || ||||| |||||| Sbjct 557857 GGCTCCATTCAAAACATCGAAGCCATCCCGCAGAAGGTCCGAGATCTTTACAAAACCGTG 557798 Query 95356 TGGGAGATC 95364 ||||| ||| Sbjct 557797 TGGGAAATC 557789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494687617033840