Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq5648 129 4e-25 seq5342 111 1e-19 >seq5648 Length=2874921 Score = 129 bits (142), Expect = 4e-25 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| | | ||||| | ||| ||| | || |||||||| ||||| || ||| Sbjct 455504 CAGAACACCCTGTACGACTGGGTTCGCGACCACCGAGTCCACCACAAATACTCGGAGACG 455563 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || ||||| ||||||||||||||||| |||| ||||| |||||||||||||| ||| Sbjct 455564 GATGCGGACCCGCACAACGCCAACAGGGGATTCTTCTTCTCCCACGTGGGATGGCTGATG 455623 Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626 ||| ||| |||| || || || || | |||||| | || ||||||| ||||| | Sbjct 455624 ATGCTGAAGCACCCGGATGTCCTC-CGCCGCGGTCGCCAGATCGACATGAGCGACATCTT 455682 Query 108627 CTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTG 108686 | || || ||||| || ||| |||||||| || || || || || || |||| Sbjct 455683 GGCGGACCCCGTGGTGCGGTTCCACCAGAAGTACTTCATCCCCCTGAAGATCTTCTTCTG 455742 Query 108687 TTT 108689 || Sbjct 455743 CTT 455745 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 108853 CCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCAC 108912 || || || |||| | ||| | | | |||| | |||||||| ||||||||||||||| Sbjct 456222 CCCAGCGAGAACATCTACGTGTCCGTGCTGGCGATGGGCGAGGGGTGGCACAACTACCAC 456281 Query 108913 CACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||| ||||||| ||||||||||| |||||| |||| ||| || Sbjct 456282 CACGTCTTCCCCTGGGACTACAAGGCGGCCGAGCTGGGCAACTAC 456326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAACGCCAACAG 108533 || |||||| | |||||||||| ||| || || |||| |||| |||||||||||||| || Sbjct 444832 GACCACAGGATACACCACAAGTTCTCCGAGACCGACG-CCGATCCACACAACGCCAAGAG 444890 Query 108534 GGGGTTCTGGTTCTCGCACGTGGGATGGCT 108563 ||| |||| ||| | |||||||| ||||| Sbjct 444891 GGGCTTCTTCTTCGCCCACGTGGGCTGGCT 444920 >seq5342 Length=2476920 Score = 111 bits (122), Expect = 1e-19 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCA--CCGCCCCGTTCA 108412 || || || || ||||| ||||| ||||||| ||||||||||||| | ||||| | | Sbjct 1579438 ACTGCTGGAGTGCATCGCCTGTGGTCCCACAAGGCCTACAAGGCCAAGCTGCCCC--TGA 1579495 Query 108413 GGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGC 108472 || | ||| || ||| ||| ||| |||| ||||||| |||| | ||||| | Sbjct 1579496 GGATCTTCTTGATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCC 1579555 Query 108473 TCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACA 108532 ||| ||| | || |||||||||| | | ||||| ||||| || |||||| || Sbjct 1579556 GCGACCACCGCGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGGC 1579615 Query 108533 GGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 | || |||| ||| | ||| |||| ||||| ||| | ||| |||||||||||| Sbjct 1579616 GCGGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGACGTGA 1579672 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 108781 CTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGACCGTCCGTTCGAC 108840 ||| |||| || |||||||| || || || ||| | |||||| || | |||| Sbjct 1580281 CTCCACTTCACCTGGCTGGTGAACAGCGCCGCCCACTTCTACGGCATGAAGCCCTACGAC 1580340 Query 108841 AAGAACATTT-TCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATG 108899 |||| | | | | || | ||||| ||||| | | || | |||| |||||||| Sbjct 1580341 GTGAACGTGAGTGCGATGA-ACAACAAGCTGGTGTCCACTCTGACAATCGGTGAGGGATG 1580399 Query 108900 GCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||||||||||||||||| ||||||| ||||||||||| |||||| |||| Sbjct 1580400 GCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCCGAGCTGGG 1580450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381746027466576