Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5380 291 7e-74 seq4595 82.4 7e-11 >seq5380 Length=870010 Score = 291 bits (322), Expect = 7e-74 Identities = 1153/1795 (64%), Gaps = 38/1795 (2%) Strand=Plus/Minus Query 122897 AAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG 122956 |||| |||| || || ||||||||| | |||||||| || || || | |||||| Sbjct 559364 AAAGATCGCTGAGCGCCCACAACATATGTTGATGCGCGTGGCAATTGGAATCCACGGAGA 559305 Query 122957 CGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGC 123016 || ||||| || ||||| ||| || | |||| | ||| || || || || Sbjct 559304 GGATATCGATGCTGCTGTGGAAACCTACAATCTTTTGTCCGAGCGATTCTTTACTCATGC 559245 Query 123017 GAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT 123076 || ||| | || ||||| | ||| || || ||||||||||||||||| | | Sbjct 559244 CTCGCCAACTCTTTTTGCCGCTGCCACAAATCGCCCACAGTTGTCTTCGTGTTTCCTCTT 559185 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAA--CTTTGCGCGATTGCGCGTTG 123134 ||| || | ||| ||| || || | | ||| | | | || | ||||| || Sbjct 559184 GACCATGACGGCCGACTCGATCGAGGGCATTT-TCAAATCCGTGGAGC-AGTGCGCCATG 559127 Query 123135 ATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC 123194 ||||| |||| | || || || || |||| ||||| | | | ||| || | Sbjct 559126 ATTTCAAAATCGGCAGGTGGTATTGGACTGAATGTGCATTGCATTCG-GGCAAAGGGCAC 559068 Query 123195 CGC-ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAA 123253 | | || | ||||| | || | | || || || | |||||||| | || | || Sbjct 559067 CTCGATTTGCGGCACCAATGGCACCTCCAATGGTCTGGTTCCCATGCTGAGGGTCTTTAA 559008 Query 123254 TAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTA 123310 |||| | ||| | || || ||||| |||||| || ||||| | || || || Sbjct 559007 CAACGTTGCACGGTATGTGGATCAGGGAGGCGGCAAGCGTCCTGGCGCCTTTGCTATTTA 558948 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || || || ||||| ||||| | ||| || | | | || |||| || Sbjct 558947 CCTGGAGCCATGGCATTCGGATGTCTTCGAGTTCCTCGAGCTCAAGAAAAACACCGGAAA 558888 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 |||||| || || ||||| || || ||||| || ||| |||||||| | || ||| Sbjct 558887 GGAAGAGAATCGTGCACGCGACTTATTCTACGCCTTGTGGATACCCGATCTCTTCATGAA 558828 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 ||| ||| | | | ||| | ||||| ||||||||||| || || |||||| | Sbjct 558827 ACGTGTAGAGGCCAACGAGGATTGGTCCCTCATGTGTCCTCATAAATGCCCCGGCCTTCA 558768 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG-----C 123545 ||| |||| ||| | | ||||| || ||||| | | ||||||| || || | Sbjct 558767 CGATGTTTGGGGCGACGAATTTGAAAAGCTGTACTTGAAGTACGAGCAAGAGGGTCGTGC 558708 Query 123546 AAACAGGTTAGTCA-GGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGT 123604 ||| | |||| | || || | | | || | |||| ||||| || | || || Sbjct 558707 CAACCGAGTAGTTAAGGCTCAGTC-CTTG--TGGTTCGCGATTATT---GAGGCGCAGGT 558654 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||||| |||| || || ||||||| ||||| ||||||||| |||| | ||| ||| Sbjct 558653 GGAAACGGGAAATCCTTATATGCTCTTTAAAGATGCCTGCAACCGGAAGAGCAACCAGCA 558594 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 || | || || || || || || || |||||| | ||||| | || ||| | | Sbjct 558593 GAATGTTGGCACTATCAAGTGCAGCAACCTTTGCACAGAAATCGTAGAGTACTCTGCGCC 558534 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACGG 123784 ||| | | || || || || ||||| || || | | || | |||| | | | | Sbjct 558533 AGATGAGATTGCAGTATGCAACTTGGCATCCATCGCCCTTAACATGTTCGTC-ACACCCG 558475 Query 123785 CG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 | | | ||||| | | || ||| | || || || || || ||| | | Sbjct 558474 AGAAGACGTACGATTTCAAGAAACTAAAAGAAGTTACCAAGACGGTCACCAAAAATCTTA 558415 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 |||| || |||||| | || | |||||| || ||| || || ||||||| || Sbjct 558414 ACAAGATAATCGATATAAACTATTATCCCCTGCCGGAGGCAAAGAAATCCAATTTGAGAC 558355 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 | | || || || | || |||| || || || ||||| || | | |||| | | Sbjct 558354 ATCGCCCCGTGGGCATCGGAGTTCAGGGTTTCGCTGACGCCTTGATTCTCATGCGATTCC 558295 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 | || ||||| || ||||| | | ||| ||| ||| ||||| ||||| |||| Sbjct 558294 CCTATGAAAGTGAAGAAGCTGGTCTTTTGAATCAGCAGATATTTGAAACTATTTACTACG 558235 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGG 124080 ||||||||||||| || || || || || | ||| | || | ||||||| || | | Sbjct 558234 GCGCTTTGGAGGCCAGTTGTGAGCTGGCTGAGATTGATGGTCCATACGAAACCTATGAAG 558175 Query 124081 GCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATT 124140 | ||||| | || |||||| ||||||||||||||||| | || || || || Sbjct 558174 GGAGCCCCGTAAGTAAGGGTATTCTGCAGTACGACATGTGGGACAAAACGCCAACGAACC 558115 Query 124141 TGTGGGACTGG-AGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTG 124199 ||||||||||| || | || || || || ||||||| | | ||||| ||| Sbjct 558114 TGTGGGACTGGCAGAAACTGAAGGAGTCG-ATCAAGAAGCACGGTGTCAGGAACTCCCTG 558056 Query 124200 TTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTC 124259 | ||||| ||||| || ||| | ||||| || ||| | || ||||||||||| ||| Sbjct 558055 CTTGTGGCTCCTATGCCCACTGCATCTACTGCCCAGATTATGGGCAACAACGAATCTTTC 557996 Query 124260 GAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATA 124319 ||||||| || | ||| | ||| ||||||| | ||||||| ||||||||| | Sbjct 557995 GAGCCGTATACGACTAATATTTACACTAGACGAGTTCTGTCCGGCGAATTTCAAGTGGTC 557936 Query 124320 AATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAAC 124379 || ||||| ||| || ||| || | || | |||| || || | ||| ||| Sbjct 557935 AACCATCACTTGTTGAGGGACCTGACTGAATTGGACTTGTGGGACGATGATATGAAGAAC 557876 Query 124380 GAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAAG 124439 |||| ||| | | | ||| | | || ||||| | || ||| | | ||| Sbjct 557875 CAAATAATTTCCAGCAGGGGCTCCATTCAAAACATCGAAGCCATCCCGCAGAAGGTCCGA 557816 Query 124440 CAACTGTACAAAACCGTGTGGGAAA----TGAAAAATAAACGATTAATTGAAATGGCCGT 124495 | || ||||||||||||||||||| || || | || |||| ||||||||| Sbjct 557815 GATCTTTACAAAACCGTGTGGGAAATCTCTGTGAAGTCTACTATTA----AAATGGCCGC 557760 Query 124496 CGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCAC 124555 || ||||| || | || |||||||| || || || ||| | ||| || || || | Sbjct 557759 TGATCGAGGTGCTTTCATCGATCAAAGCCAGTCCTTCAACATTCATGTGGCAGAGCCAAA 557700 Query 124556 CTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAACGGGCA 124614 ||||| | || ||||||| | || | |||| ||| || || ||||| || | Sbjct 557699 CTACGGAAAGCTTACGTCCATACACTTTTACTCCTGGA-AAGCTGGGCTTAAAACCGGAA 557641 Query 124615 TGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 |||| || | | || || ||||| || | |||||||| || ||||| ||||| Sbjct 557640 TGTACTATCTGCGCACAAAGCCGGCAGCAAACGCCATTCAGTTCACCGTGGACAA 557586 >seq4595 Length=987418 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||||||||| | | ||| | |||| || || ||||| ||||| || |||||| Sbjct 267356 TCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGA 267415 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || | || |||| ||| || || ||| | ||||| || ||||| || || || Sbjct 267416 CAAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGG 267475 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 || || || || || || ||||| || | || | || | ||||| || | ||| | Sbjct 267476 GATTCCCTCCTTGTCCTGGATTTTGGCCTTCA-CGTTCTCAATAGTGTCCGACGGCTCTA 267534 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | ||||| ||||| || || || || || || ||||| Sbjct 267535 CCTCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970689669840