Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5351 118 1e-21 seq5545 116 5e-21 seq2263 109 7e-19 >seq5351 Length=991022 Score = 118 bits (130), Expect = 1e-21 Identities = 281/421 (67%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| ||||||||| ||||||||||| || || || || ||||||| Sbjct 257272 GTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGCGAAATCATCTCCAT 257331 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || | ||| |||||||| | ||| | || || || || | || || | ||| Sbjct 257332 GAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACCAGCAAACG 257391 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 || | ||| |||| || |||| |||||| || | ||||| ||||| ||||| Sbjct 257392 GTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGTTCAC 257451 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 ||| || || || || |||| ||| ||||||| |||| || || || | ||| | Sbjct 257452 TGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCGCGAATGAT---TTC 257508 Query 127471 AATAGTG---TCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACT 127526 ||| || || | |||| ||| || || || ||| | ||| || || | Sbjct 257509 AATGATGCGCTCTCGCTTGGGTC-GCTGCACAAGGTGCTGGAACATCAGCACTGCGAAAT 257567 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | || ||||||||||| | ||||| || || || |||||| ||| || ||||| | Sbjct 257568 CGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCA 257627 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || |||||||||| ||||||||| | || ||| ||||||||| || |||| Sbjct 257628 GGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCTTCCA 257687 Query 127647 C 127647 | Sbjct 257688 C 257688 >seq5545 Length=267088 Score = 116 bits (128), Expect = 5e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||||||||| ||| | | || || || || ||||||| ||||| || | ||| || || Sbjct 143665 ATCTTTGCCGCCCGTCAATCGAGTACCGAACTGACCACGCGGCTCCAGCAAATTAATGTT 143606 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||| | ||||| ||| | | |||| || ||||| || ||| || || ||||| || | Sbjct 143605 GTTCGCGCCCACATAATTCTGGGCCAGATTCACAATGGTCATCTGC-AGCGAGACCTCGC 143547 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 ||||||||||||||||| | || ||||| | | | || ||| |||||||||| ||| Sbjct 143546 CGTGATGGTAGGCCGACATTTCGGCCACCGAACCGGACAGCTGGGCCACCTTCACCTCGC 143487 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTG 176148 |||| |||| | | ||| || | |||| ||||| | ||| Sbjct 143486 GCTTGTCGTTCCTCTTGAAACAGGTGAACATCACCTTGCGCTG 143444 >seq2263 Length=7733 Score = 109 bits (120), Expect = 7e-19 Identities = 250/371 (67%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| ||||| || || || || || || || ||| || | || ||||| || Sbjct 7479 CTGACGGTCAAAACGGCCGGGACGCAGCAGAGCCGGGTCCAGCACGTCCGGACGGTTGGT 7420 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || || || | | | |||| | | | || || || |||||||| || | || Sbjct 7419 GGCAGCAATCAGGATCACGCCCTCATTGCTTTCAAACCCGTCCATCTCGACCAGCATCTG 7360 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACC 12877 || | || || ||||| ||||||||| || | ||||||| || || || Sbjct 7359 GTTCAGCGTCTGCTCACGCTCATCATTCCCGCCGCCAAGGCCCGCACCACGATGGCGGCC 7300 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACGG-TTGATTTTCACGGGCAACTTCAA 12936 ||||||||||||||||||||||| | ||| ||||| | ||| | | | || | Sbjct 7299 CACGGCGTCAATTTCGTCAATGAAGATGATGCACGGCGCGGCCTTCTTGCCCTGC-TCGA 7241 Query 12937 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 12996 | || || ||||| | | ||||| ||||| |||||||| |||||||| | | ||| Sbjct 7240 ACATGTCACGCACACGCGACGCACCAACACCGACAAACATTTCCACAAAGTCAGACCCGG 7181 Query 12997 AACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 || || | || ||| || || |||| |||||||| ||||| || || || |||||||| Sbjct 7180 AA-ATGGTGAAGAACGGCACATTGGCCTCACCCGCAATGGCACGCGCCAGCAGGGTCTTA 7122 Query 13056 CCCGTCCCTGG 13066 ||||| || || Sbjct 7121 CCCGTGCCCGG 7111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613463073494640