Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5380 196 8e-45 seq5351 196 8e-45 >seq5380 Length=870010 Score = 196 bits (216), Expect = 8e-45 Identities = 343/494 (69%), Gaps = 4/494 (1%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||||||||| ||||||||||||||||| | || ||| | | | |||||||||||| | Sbjct 557584 TCTTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTC 557643 Query 203898 CGGTCTTTAGGCCCTTC-TGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 |||| |||| |||| | | ||| ||| | ||| ||||| | || || | ||| Sbjct 557644 CGGT-TTTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTTT 557702 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||| |||||||| | ||||||||||| |||||||||| | ||||| ||| Sbjct 557703 GGCTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCG 557762 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| || ||| | | |||| || || |||||||| || ||| | | |||| | Sbjct 557763 GCCATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGACC 557822 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | || || | ||| | | || || || ||||| || || || | | || | Sbjct 557823 TTCTGCGGGATGGCTT-CGATGTTTTGAATGGAGCCCCTGCTGGAAATTATTTGGTTCTT 557881 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | || || |||||| | |||| |||| |||| || || ||| |||||| | Sbjct 557882 CATATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCAC 557941 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||||| || |||||||| || | || ||| | | || | || | || ||||| | Sbjct 557942 TTGAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGA 558001 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||||| | |||||| || || || |||||||| ||||||| |||||||| Sbjct 558002 TTCGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGA 558061 Query 204316 GTTGCGCACACCGT 204329 ||| | ||||||| Sbjct 558062 GTTCCTGACACCGT 558075 >seq5351 Length=991022 Score = 196 bits (216), Expect = 8e-45 Identities = 540/814 (66%), Gaps = 34/814 (4%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || ||||||||||||||||| |||||||| |||| || || |||||||| || Sbjct 257282 ACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGCGAAATCATCTCCATGAAGTTAAAG 257341 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 |||||||| || ||| ||| || || | || ||||||| | ||| ||||| Sbjct 257342 GGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACCAGCAAACGGTCGGCCACG 257401 Query 159764 AATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || ||||| || || | ||||| | || || || || || | || | || || || || Sbjct 257402 AACTCGATATA-CTGCGACATCAGATCGCAATTCATGCCGATAAGGTTCACTGGCAGGGC 257460 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 || | || ||||||| |||||| | ||||| ||| | || | || || || Sbjct 257461 ATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCGCGAATGATTTCAATGATGCGCTC 257520 Query 159883 GTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCAC-GCAAAGTCGCAGTGC 159940 | | || | || || || ||| || |||| || ||| || || ||||| ||| Sbjct 257521 -TCGCTTGGGTCGCTGCACAAGGTG---CTGGAACATCAG-CACTGCGAAATCGCAATGC 257575 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 || |||||||||| ||||| | ||||||||| | | | || |||||||| | || ||| Sbjct 257576 AGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGGCCTCGC 257635 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| ||||||| || || ||||| || ||||| || |||||||| ||| Sbjct 257636 TTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCTTCCACGGCGGCA 257695 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG-TGTCATGGG-----TCCACCTTTTG 160114 || || | || | ||| || || ||||| || | ||| |||| || Sbjct 257696 AAGGCGATGATGCGCTCCCCGAA------GTTGGCTGACTTGGAGGAGATCCAGGACATG 257749 Query 160115 GCCCATTCAGCCTTCTTTGCGATGCAC----GGCATGCGCTCGACGGCGTTAAACAATCT 160170 ||||| |||||||| ||| | ||| ||||| |||| |||||| |||| Sbjct 257750 GCCCAGTCAGCCTT----GCGCTTCACCGCCGGCATCGTTTCGATGGCGTTGAACAGGTA 257805 Query 160171 GTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTG 160230 || ||| | | ||| ||| || | |||||| |||||| || | ||| Sbjct 257806 CTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTACATCTCCGAGTG 257865 Query 160231 CACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCA-GATACTGCACCT 160289 ||| || || ||||| ||||| ||| |||||| | ||||| ||| |||||||| Sbjct 257866 CACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTGAT-CTGCACCT 257924 Query 160290 CCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAG 160349 |||| |||| | | ||||||| |||| || | || |||| ||| || ||||| | Sbjct 257925 CCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGCTGCGAAGAAGG 257984 Query 160350 CCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCA 160409 |||||||||| || || || || | |||||| | || | | | ||||| |||| Sbjct 257985 CCAACACGTGCGAAATAAAGTGGCGCTCGTCGTCCTTCAAGC---GGTGCCAGTCGGTCA 258041 Query 160410 CGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 ||| | || || || ||||| ||| || |||| Sbjct 258042 GGTCCTTGGACAGGTCCACCTCCTCCACGGTCCA 258075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795098008462240