Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5614 159 4e-34 seq4595 141 1e-28 seq5446 116 4e-21 seq5380 93.3 5e-14 >seq5614 Length=3457230 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || | || ||||| |||| |||||| ||| |||||||||||| ||||||||||| Sbjct 1201156 GCCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGA 1201097 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| |||| || ||||||||||| || || ||||| ||||||||||| | || Sbjct 1201096 CAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGG 1201037 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | |||||||||| |||||| ||||| || | | || ||| | || || Sbjct 1201036 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGAC 1200977 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| |||| || || |||||||| ||||| Sbjct 1200976 CTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 156 bits (172), Expect = 5e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| |||||| ||| |||||||||||| |||||||| || |||||||| | Sbjct 1200688 ACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCC 1200629 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| || || ||||| ||||||||||| | || | | |||||| Sbjct 1200628 GTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTT 1200569 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| || | | || ||| | ||| || |||| ||||| Sbjct 1200568 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGAT 1200509 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 ||| ||||| || | || || |||||||| ||||| |||| Sbjct 1200508 GGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCATATTGC 1200468 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| |||||| ||| |||||||||||| |||||||| || |||||||| | Sbjct 1200916 ACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCC 1200857 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| || || ||||| ||||||||||| | || | | |||||| Sbjct 1200856 GTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTT 1200797 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| || | | || ||| | || || |||| ||||| Sbjct 1200796 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGAT 1200737 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||| || || |||||||| ||||| Sbjct 1200736 GGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 >seq4595 Length=987418 Score = 141 bits (156), Expect = 1e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| |||||| ||| |||||| ||||||||||| || || Sbjct 267813 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGAC 267872 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||||||| | || || ||||||||||||||||| |||| |||||||| || | || Sbjct 267873 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 267932 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCC 46543 | | |||||||||| ||| || ||| | || | | ||||| |||| ||| Sbjct 267933 ATTCCCTCCTTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTC---CGATGGCTCC 267989 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || ||||| || || || ||||| ||||| Sbjct 267990 ACCTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| ||||| ||| |||||| ||||| ||||| ||||| Sbjct 267357 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGAC 267416 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| |||| || || |||||||||||||| ||||| |||||||| || | || Sbjct 267417 AAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGG 267476 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| ||| || ||| | || | | ||||| || || || Sbjct 267477 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACC 267536 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || || || || || ||||| ||||| Sbjct 267537 TCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| || | || |||||| ||||| ||||||||||| | ||| || | Sbjct 268508 ACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACC 268567 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| |||||||| || | || | | |||||| Sbjct 268568 GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTT 268627 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| || || || | || | | ||| ||| | || || |||| || || Sbjct 268628 GTCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAAT 268687 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| || |||| || || |||||||| ||||||||| Sbjct 268688 GGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 268727 Score = 113 bits (124), Expect = 5e-20 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | |||||| |||| || | || ||||| ||||| |||||||||| Sbjct 268039 TGCCACCACGGAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGG 268098 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | |||||| | || || |||||||||||||| || |||| |||||||| || | | Sbjct 268099 ACAAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAG 268158 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---T 46541 | | | |||||||||| ||| || ||| | || | | ||||| |||| | Sbjct 268159 GAATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTC---CGATGGCT 268215 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| |||||||| || || ||||| || || || ||||| ||||| Sbjct 268216 CCACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Score = 111 bits (122), Expect = 2e-19 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | |||||| |||| || | || |||||| ||||| ||||| |||| Sbjct 267583 TGCCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGG 267642 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | |||||| | || || ||||||||||||||||| |||| |||||||| || | | Sbjct 267643 ACAAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 267702 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---T 46541 | | | |||||| || ||||| ||| | || | | ||||| |||| | Sbjct 267703 GAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTC---CGATGGCT 267759 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||| |||||||| || || ||||| || || || ||||| |||||| Sbjct 267760 CCACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATT 267812 Score = 104 bits (114), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | |||||| |||| || | || ||||| ||||| |||||||||| Sbjct 268267 TGCCACCACGGAGACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGG 268326 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||| || |||| || ||||||||||||||||| |||| |||||||| || | | Sbjct 268327 ACAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAG 268386 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---T 46541 | | | |||||| || ||||| ||| | || | | ||||| |||| | Sbjct 268387 GAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTC---CGATGGCT 268443 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| |||||||| || || || || || || || ||||| ||||| Sbjct 268444 CCACCTCCAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 >seq5446 Length=1541693 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || ||||| ||||||||||| Sbjct 1371127 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAA 1371186 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||| ||| ||||| ||| | | Sbjct 1371187 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATT 1371246 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | |||||| |||| || ||||| ||||| || || |||||||| Sbjct 1371247 CTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGGTCTTGCCGGTAAGGGTTTTAAC 1371306 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 1371307 GAAGATTTGCAT 1371318 >seq5380 Length=870010 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || |||||| || || || || || || || ||||| | || || Sbjct 656791 CACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCATCTTC 656732 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| |||||||| || | || | | || |||||| Sbjct 656731 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 656672 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | | | || || || ||| || || | |||||||| || Sbjct 656671 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTGATGGTCTT 656612 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| || || ||||| ||||| ||||| ||| Sbjct 656611 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 656578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565197745228080