Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5454 145 6e-29 seq5646 120 2e-21 seq5580 120 2e-21 seq1974 114 1e-19 seq2054 105 5e-17 >seq5454 Length=2883911 Score = 145 bits (160), Expect = 6e-29 Identities = 927/1471 (63%), Gaps = 29/1471 (2%) Strand=Plus/Plus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||| || ||||| || || ||||||||||||| ||| || ||||| || || | || || Sbjct 1047147 GGCGGTAACATTCAGGATTCCATTGGCATCCAGATCGAAGGTGACATCGATCTTGGGTAC 1047206 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || || |||| || || || || || ||| || || |||| ||| || || || Sbjct 1047207 TCCCCTAGGAGCTGGCGGAATGCCGGTCAGATTGAAGGTGCCCAACACATTGTTGTCCTT 1047266 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | || || || ||||||| |||||| || ||| | | || || || | || Sbjct 1047267 GGTCAGAGCACGCTCTCCTTCGAAAACTTGGATGGTCACTGCTGGCTGGTTGTCCGCGTA 1047326 Query 517438 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || || || | |||| || || ||||| |||| | || || | ||||| Sbjct 1047327 GGTGGTGAAGGTCTTCGATTGCTTGCAGGGAATGCGACTGTTGCGCTCGATCAGCTTGGT 1047386 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||||| || ||||| | || || || ||||||| ||||| || || | | Sbjct 1047387 CATCACTCCACCAGCGGTTTCAATTCCCAGTGATAGAGGAGCCACATCCACCAGCAGCAC 1047446 Query 517558 AT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 || |||| | | || | || | |||||||||||| || || ||||| || | Sbjct 1047447 ATCCTTGATCTGGCTGCTCTCGTCTCCCGA-AAGAATAGCTGCCTGGATGGCAGCTCCGT 1047505 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA-AAAATTT 517675 | || || || || || ||||| | | ||| || | || || || || | | Sbjct 1047506 AAGCCACCGCCTCGTCCGGATTGATGGAGAGATTAAGGGTCTTGCCGCCAAAGAAGCTCT 1047565 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 | | | ||| | ||||| ||||| |||| || || ||||| | ||||| || || Sbjct 1047566 GCAGCAGGTTCT-GCACCTTGGGAATGCGAGTCGAGCCACCAACCAGGACAATATCGTGG 1047624 Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT 517795 | ||| || |||| || | || | | || || ||||| | || | | | Sbjct 1047625 ATCTGGCCCTTGTCCATCTTGGCGTCGGCGAGTGCCTTCTCCACGGGCTGGAG-CGTGTT 1047683 Query 517796 -CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-T 517853 | || | ||| |||||||| |||||| | || | | | || | || || | Sbjct 1047684 GCGGAAGAGGTCGCCGCAAAGTTCCTCGAATCTGGCGCGGCTCACCTTG-GAGTAGAAGT 1047742 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 | ||| || |||| || ||| | || | || || | || || ||||| | | Sbjct 1047743 CGTGTCCCTCAAACAGAGCATCGATCTCCAGCGAAGCCTCCGTGCTGGAGGATAGAGTGC 1047802 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 517971 | || ||||| || || || | || | || | ||| | | ||||| ||| Sbjct 1047803 GCTTTGCACGCTCGGCAGCCGTGCGAAGGCGACGAAGTGCTCTGG--GATTGGAGCGCAA 1047860 Query 517972 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGACGATTATCAA 518030 ||| | || || || |||||||| || || | || ||| || ||||| || |||| Sbjct 1047861 ATCCTTCTTGTACTTCCTCTTGAACTCCTCGGC-CAGGTGGTTCACCAGACGGTTGTCAA 1047919 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCAT 518087 | || || || |||| | ||| | ||| | || | | || | ||| || ||| | Sbjct 1047920 AGTCCTCGCCACCCAGATGAGTGTCTCCGGCGGTGGAGCGCACCTCGAAGAGCGATCCCT 1047979 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | || | | || || | |||||| |||||| || |||| |||||| || || |||| Sbjct 1047980 CGTCGATGGTCAGAATGGAGACATCAAAGGTTCCGCCGCCCAGATCAAAGATGAGCACAT 1048039 Query 518148 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | |||| | | || || || || || || || | ||||||||| || || || | Sbjct 1048040 TGCGTTCTCCCTTAAGATTCTTGTCCAGGCCGTAGGCCAGAGCAGCAGCGGTGGGCTCGT 1048099 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | ||||| | | ||||| | || || || || |||||||| ||||| |||| | Sbjct 1048100 TGATAATGCGGAGCACATTCAATCCGGCGATGGCGCCGGCATCTTTGGTGGCCTGTCGCT 1048159 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATAT 518327 | |||||||| || || || || || || || |||||||| | ||| | || | | Sbjct 1048160 GAGAATCGTTGAAGTAGGCGGGCACTGTGATGACGGCATCTTTAACTGTAGTGCCCAAAA 1048219 Query 518328 AAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAAT 518387 | || ||||| | ||||| || | | | ||| || || | ||| || | Sbjct 1048220 AGGCCTCGGCCGTCTCCTTCATCTTGGTAAGCACCATCGAGCTGATCTCTTCCGGAGCGA 1048279 Query 518388 ATTGCTTGGATTCATTTTGATATGATACTTCA-----AAATATGGTTTATTACCAACATT 518442 | |||| || | ||| ||| || | | ||||| | | || Sbjct 1048280 AGCGCTTCTCCTCGCCCT----TGA-ACTCCACGCTCATCTTGGGTTTGCCATTGTCGTT 1048334 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTC 518501 || || |||||||||| ||||| ||| || | ||| || || | ||| | Sbjct 1048335 GATCACGCGGAATGGCCAGTGCTTCATGTCTTCCTGGA-TCTTGGGATCGTCGAAACGGC 1048393 Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561 |||||| ||||| || ||||| || | | || |||| || || || | || | | Sbjct 1048394 GACCAATCAATCGCTTGGCATCGAAGACCGAGTTCTTTGGGTTCATGGCCACCTGGTTCT 1048453 Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621 |||| || |||||||| || | |||| || || |||| ||| || ||||| ||||||| Sbjct 1048454 TGGCAGCGTCTCCAATTAGGCGCTCTGAATCGGTGAATGCAACGTAGGATGGGGTTGTGC 1048513 Query 518622 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 518681 | || || || |||||||| ||||| || || || || | || | ||||| || || Sbjct 1048514 GGTTGCCCTGGTCATTCGCGATAATCTCCACCTTTCCGTGCTGGAAGACACCAACGCACG 1048573 Query 518682 TAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | || || || || || || |||||||| Sbjct 1048574 AGTACGTGGTGCCCAAGTCGATTCCAATAGC 1048604 >seq5646 Length=1495928 Score = 120 bits (132), Expect = 2e-21 Identities = 358/550 (65%), Gaps = 2/550 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || ||||| || |||| |||||| || || || || || || || | || ||| Sbjct 290089 TTCTTGTCCAGACCGTAAGCAATAGCAGCGGCCGTGGGCTCGTTGATGATACGCAGCACA 290148 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| || || |||| ||||| || ||||| || | || || ||||| || || Sbjct 290149 TTCAGACCGGCGATGGTTCCAGCATCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAG 290208 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || ||||| || || || | || || || || | || || || || | Sbjct 290209 GCCGGCACAGTGATGACAGCGTTGGTCACAGTCTTGCCCAGGTAGGCCTCAGCGGTCTCC 290268 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG-CTTGGATTCATT 518403 ||||| || | | | ||| || || || | || |||||| | | ||| |||| Sbjct 290269 TTCATCTTGGTCAGCACCATCGAGGAGATCTCCTC-GGGGAAGAAGGTCTTCTTCTCATC 290327 Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463 | || | || || | | || || | || | | || | || ||||||| Sbjct 290328 CTTGTAGGTCACCTCGATCTTGGGCTTGCCGTCCACGCTGACCACCTCGAAGGGCCAGTG 290387 Query 518464 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523 ||||| || || || || ||| | || | | ||||| || || || ||||| Sbjct 290388 CTTCATGTCCGACTGCACGGCGGAGTCGTCGAACTTGCGGCCAATCAAACGCTTGGCATC 290447 Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583 || || || | ||| || || || || | || | ||||| ||||| || |||||| | Sbjct 290448 GAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGGCATCGCCGATCAGACG 290507 Query 518584 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643 || || || || || | |||||| |||||||| || |||||||| || || || || || Sbjct 290508 CTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCTGGTCGTTGGCGAT 290567 Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 518703 || || || || |||| || | || || || || | || || || |||||||| Sbjct 290568 GATCTCGACCTTGCCATGCTGGAACACGCCCACGCACGAGTAGGTGGTGCCCAAATCAAT 290627 Query 518704 ACCAATAGCA 518713 ||||| |||| Sbjct 290628 ACCAACAGCA 290637 >seq5580 Length=1179668 Score = 120 bits (132), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 ||||||| ||| || || |||||||| || |||||||| |||| || || |||| || Sbjct 1005547 GTCGATTTTTCATCGCCCAATATTGCCAAGCAAATGCATGTTGGTCACTTGCGATCCACA 1005488 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922 |||||||| ||||| |||||| || |||| || | || ||||| || |||||| Sbjct 1005487 ATTATTGGCGAATCGATTTGTCGGCTATTGGAGTTTCTTGAGCACGACGTGGTCCGTATT 1005428 Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 |||||| | || ||||||||||| || || || ||||| ||||| Sbjct 1005427 AATCATCTTGGCGATTGGGGAACACAGTTTGGCATGTTGATTGC 1005384 >seq1974 Length=2389 Score = 114 bits (126), Expect = 1e-19 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||||||| || ||||| || || || | || || | |||||||||| Sbjct 537 CCATAAGCAAGAGCAGCAGCCGTCGGTTCGTTGATGATACGCAGGACTTCAAGACCAGCA 478 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | ||||||||||| || || || | || | ||||||||| || || ||||| || Sbjct 477 ATACGGCCTGCATCTTTGGTAGCCTGACGCTGGGCATCGTTAAAGTAAGCCGGAACCGTG 418 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 || ||||| | || |||| || ||||| || || || |||| ||||||||| Sbjct 417 ATCACGGCCTGCGTCACTTTTTCACCAAGGTACGCCTCGGCGGTTTCTTTCATTTT 362 >seq2054 Length=14114 Score = 105 bits (116), Expect = 5e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || || || || | ||| ||||| || ||| | || || || | || ||| Sbjct 4911 TTCTTTTCCAGCCCGTAAGCCAGAGCCGCAGCGGTGGGTACGTTGATGATACGCAGAACT 4852 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | ||||||||| || | || ||||| || || || || | || | ||||||||| || Sbjct 4851 TCAAGACCAGCGATACGACCGGCATCCTTGGTTGCCTGACGCTGGGCATCGTTAAAGTAA 4792 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 |||||||| ||||||||||| | || |||| || ||||| ||||| || |||| Sbjct 4791 GCAGGAACGGTAATAACGGCCTGCGTCACTTTTTCACCAAGGTAAGCCTCGGCGGTTTCC 4732 Query 518345 TTCATTTT 518352 |||||||| Sbjct 4731 TTCATTTT 4724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780536867566324