Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5380 123 3e-23 seq2263 84.2 3e-11 >seq5380 Length=870010 Score = 123 bits (136), Expect = 3e-23 Identities = 627/978 (64%), Gaps = 30/978 (3%) Strand=Plus/Plus Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 ||||||| | ||| | || || | ||| ||||||||||| || |||| || | ||| Sbjct 558386 GGGATAATAGTTTATATCGATTATCTTGTTAAGATTTTTGGTGACCGTCTTGGTAACTTC 558445 Query 106408 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 106467 | ||||| | |||| | || |||| |||| || | ||||||||| Sbjct 558446 TTTTAGTTTCTTGAAATCGTACGT---CTTCTCGGGTGTGACGAACATGTTAAGGGCGAT 558502 Query 106468 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 106527 |||||||| ||||| || || ||||||| | | |||||||| |||||||| || Sbjct 558503 GGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGTACTCTACGATTTCTGTGCA 558562 Query 106528 CAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATC 106587 | |||| | ||| || || || | ||||| ||||| ||||| |||||| ||||| Sbjct 558563 AAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATC 558622 Query 106588 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC-A 106646 || ||||||| || || | ||||| ||| ||| | || | ||| || |||| | Sbjct 558623 TTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCTCAATAATCGCGAACCACAA 558682 Query 106647 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 106706 | | | || || | |||||| || ||||| ||||||||| ||| || Sbjct 558683 GGACTGAGCCT-TAACTACTCGGTTGGCACGACCCTCTTGCTCGTACTTCAAGTACAGCT 558741 Query 106707 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 106766 |||||| || || ||| | ||| || || || || | ||||| | || | Sbjct 558742 TTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGGCATTTATGAGGACACATGAGGG 558801 Query 106767 ACCATTGACCACCCT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGA 106824 |||| | || | | |||| || || |||||||| || || || ||||||| || | Sbjct 558802 ACCAAT--CCTCGTTGGCCTCTACACGTTTCATGAAGAGATCGGGTATCCACAAGGCGTA 558859 Query 106825 AAAGAGATCTC-TACACCGAGCCTCTTCGTCACC-TTGGTTGAGTCGTAACTCAAGGAAC 106882 || | || | | || ||| |||||| | || || || | | | ||| |||||| Sbjct 558860 GAATAAGTCGCGTGCA-CGATTCTCTTCCTTTCCGGTGTTTTTCTTG-AGCTCGAGGAAC 558917 Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAG----ATAG--ACTGCGATAGATCCCTTTCGA 106936 || | || ||||| ||||||||||| || |||| | ||| || | ||| | Sbjct 558918 TCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAGGCGCCAGGACGCTT--GC 558975 Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 || || | |||| ||||| || || | |||||| || | ||||| |||| | | Sbjct 558976 CG-CCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACCCTCAGCATGGGAACCAGA 559034 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGAT 107055 |||| || ||||| || || | ||| |||| | || || | | ||| | Sbjct 559035 CCATTGGAGGTGCCATTGGTGCCGCAAAT-CGAGGTGCCCTTTGCCCGAATGCAATGCAC 559093 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCAC-ACTCCGTAAGAGTTCC 107112 | || |||||||| || ||| | ||||| || | |||||| |||| | | || Sbjct 559094 ATTCAGTCCAATACCACCTGCCGATTTTGAAATCATGGCGCACTGCTCC--ACGGATTTG 559151 Query 107113 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 107172 | | || || | ||| ||||| || | ||| | ||||| || |||| ||| || Sbjct 559152 A-AAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGAAACACGAAGACAACTGTGG 559210 Query 107173 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 107232 | ||| |||| || || ||||| | || ||| | || | | | ||||| Sbjct 559211 GCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAAAGAATCGCTCGGACAA 559270 Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292 | ||| || |||| ||| ||| || || || |||||||| || || ||||| || Sbjct 559271 AAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGTGGATTCCAATTGCCACGCG 559330 Query 107293 CATAAACATGTATTGGGG 107310 ||| ||||| | ||| || Sbjct 559331 CATCAACATATGTTGTGG 559348 >seq2263 Length=7733 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 9447 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGAC 9505 || || ||||| |||||||| |||||||||| | ||||| || | || ||| || || Sbjct 7220 GCACCAACACCGACAAACATTTCCACAAAGTCAGACCCGGAA-ATGGTGAAGAACGGCAC 7162 Query 9506 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGC 9565 ||| | |||||||||||||| || || || || ||||||||||| || || || | Sbjct 7161 ATTGGCCTCACCCGCAATGGCACGCGCCAGCAGGGTCTTACCCGTGCCCGGAGGCCCGAC 7102 Query 9566 GAGGAGGGCACCCCGTGGAATCTTGGCGCC---ACTTCCAAAGTATCTCTCAGGTTGCTT 9622 || ||| | ||| || || ||| |||| || || || ||| || | || Sbjct 7101 CAGCAGGACGCCCTTGGGGATTTTGCCGCCCAGACGGGTAA---ATTTCTGCGGGTCTTT 7045 Query 9623 GAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || || || ||||| || | | ||| | ||||| | ||||| ||| ||||||| Sbjct 7044 CAGGAAGTCGACAATTTCCTGAAGCTCACCCTTGGCTTCATCAATACCCGCAACATC 6988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589938365630960