Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4595 149 1e-30 seq5380 138 3e-27 seq5446 129 1e-24 seq5614 123 6e-23 >seq4595 Length=987418 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| || || ||||| || || || |||||||||| | ||| | Sbjct 267593 GAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCG 267652 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || |||||||| || || || || ||||||||||| || || Sbjct 267653 TCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTC 267712 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || |||||||| || ||| || ||||| ||||||||||| ||||| || || || Sbjct 267713 CTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGT 267772 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||| |||| || || ||||| | |||||| Sbjct 267773 GATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATT 267812 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| || || ||||||||||| | ||||| | ||||||||| |||||||| || Sbjct 267842 AGTAGACTCCTTCTGGATATTGTAATCAGACAGAGTGCGCCCATCTTCAAGCTGCTTGCC 267901 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 267902 GGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTT 267961 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || ||||| || |||||||| ||||| || || || | |||||||| |||| || Sbjct 267962 TACATTCTCGATAGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTTTCCAGTCAGGGT 268021 Query 195123 TTTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 268022 CTTCACGAAGATCTGCAT 268039 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| || || || || || || || ||||| |||| | ||| | Sbjct 268049 GAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCG 268108 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || || ||||| || || || || ||||||||||| || || Sbjct 268109 TCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTC 268168 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || ||||| ||| || ||||| ||||||||||| ||||| || || || Sbjct 268169 CTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGT 268228 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| |||| || || ||||| | ||||| Sbjct 268229 GATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| || || ||||| || || || ||||| |||| | ||| | Sbjct 268505 GAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACG 268564 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || |||||||| || |||||||| || || || || ||||||||||| || || Sbjct 268565 ACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTC 268624 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| |||||||| || || ||||| || || || || || || || ||||| Sbjct 268625 CTTGTCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGT 268684 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| ||||| || || || || | ||||||| Sbjct 268685 AATGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTT 268725 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| || || || || || || || ||||| |||| | ||| | Sbjct 268277 GAGACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAAGTACG 268336 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || |||||||| || ||||| || || || || || ||||||||||| || || Sbjct 268337 ACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTC 268396 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || |||||||| || ||| || ||||| ||||||||||| ||||| || || || Sbjct 268397 CTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGT 268456 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | || || ||||| | ||||| Sbjct 268457 GATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| ||||| || || || |||||||||| | ||| | || || || || || Sbjct 267380 GTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCGTCCTCCAGTTG 267439 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | || || || |||||||| || || || ||||| || ||||| Sbjct 267440 CTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATTTT 267499 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||||||||| |||||||| || || || || || | || ||||| || Sbjct 267500 GGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACCTCCAGAGTGATGGTTTTTCCGGT 267559 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 267560 AAGGGTCTTCACGAAGATCTGCAT 267583 >seq5380 Length=870010 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || ||||| || ||||| | || || | |||||||| ||||| Sbjct 656785 GTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCATCTTCCAGCTG 656726 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| || Sbjct 656725 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 656666 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || || || ||||| ||| || |||||||| | ||||| || || Sbjct 656665 GGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTGATGGTCTTGCCCGT 656606 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 656605 GAGGGTCTTAACGAAGATCTGCAT 656582 >seq5446 Length=1541693 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | ||||| || ||||| Sbjct 1371115 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTG 1371174 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| || || || || ||||| || || || || || || ||||| || Sbjct 1371175 TTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTT 1371234 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| |||||||||||| |||||| || | ||||| ||||| || || Sbjct 1371235 GGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGGTCTTGCCGGT 1371294 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 1371295 AAGGGTTTTAACGAAGATTTGCAT 1371318 >seq5614 Length=3457230 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| ||||| || ||||| || | ||||| | || || || |||||||| || Sbjct 1200670 AGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCC 1200611 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | ||| || |||||||| ||||| || || ||||| || || || ||| Sbjct 1200610 AGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 1200551 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||||||||||||| || || ||| || || | ||| | ||||| || || ||||| Sbjct 1200550 GACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTCTTGCCGGTTAAAGT 1200491 Query 195123 TTTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 1200490 CTTGACAAAGATCTGCAT 1200473 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| ||||| || ||||| |||| ||||| | || || || |||||||| || Sbjct 1201126 AGTAGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCC 1201067 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | ||| || |||||||| ||||| || || ||||| || || || ||| Sbjct 1201066 AGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 1201007 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| ||||||||||| || || || || || | ||| | ||||| || |||||||| Sbjct 1201006 GACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGT 1200947 Query 195123 TTTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 1200946 CTTGACAAAGATCTGCAT 1200929 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| ||||| || ||||| || | ||||| | || || || |||||||| || Sbjct 1200898 AGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCC 1200839 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | ||| || |||||||| ||||| || || ||||| || || || ||| Sbjct 1200838 AGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 1200779 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| ||||||||||| || || || || || | ||| | ||||| || |||||||| Sbjct 1200778 GACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGT 1200719 Query 195123 TTTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 1200718 CTTGACAAAGATCTGCAT 1200701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109399805549318