Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5380 107 1e-18 seq4595 104 2e-17 seq5614 98.7 6e-16 seq5446 86.0 4e-12 >seq5380 Length=870010 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || |||||||||||||| || || ||| | || |||| ||| Sbjct 656790 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCATCTTCC 656731 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 656730 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 656671 Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || | ||| || || || | ||| ||||| || Sbjct 656670 ATCTTGGCTTTGACATTTTCGATAGTATCCGACGG-TTCGACCTCAAGGGTGATGGTCTT 656612 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| ||||| || ||||||||||| || Sbjct 656611 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 656579 >seq4595 Length=987418 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || || ||||| ||||| ||||| || | | || | || Sbjct 268511 CAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTC 268570 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 268571 CTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTC 268630 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||| || ||| || || || |||| || || |||||| || | ||| ||| Sbjct 268631 CTGAATTTTGGCTTTCAC--ATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATG 268688 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| || | |||||||||||||||||||| || Sbjct 268689 GTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 268726 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || ||| ||||| ||||| ||||| || | | || | || Sbjct 268283 CAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTC 268342 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || ||||| || || || || ||||| ||| | || | |||||||| || Sbjct 268343 CTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATC 268402 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTA 34944 |||||| || || || || |||| | ||| | ||| || || | || | Sbjct 268403 TTGAATCTTGGCCTTCAC--ATTCT--CGATGGTGTCCGATGGCTCCACCTCCAGAGTGA 268458 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| ||||| ||||| |||||||| |||||||||||| Sbjct 268459 TGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATA 268496 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || || ||||| ||||| || || || | | ||| |||| Sbjct 267599 CAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATC 267658 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || ||||| || || || || ||||| ||| | || | |||||||| || Sbjct 267659 TTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATC 267718 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTA 34944 |||||| || || || || |||| | ||| | ||| || || | || | Sbjct 267719 TTGAATCTTGGCCTTCAC--ATTCT--CGATGGTGTCCGATGGCTCCACCTCCAGAGTGA 267774 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||||| || || |||||||| ||||||||||| Sbjct 267775 TGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 267811 >seq5614 Length=3457230 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| |||||||| || | ||| | || || ||||| || || ||||| Sbjct 1200663 TCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAG 1200604 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| ||||||||| | || | ||||||||||| ||||| |||||| Sbjct 1200603 ATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 1200544 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || || || || | ||| ||||| || || || | |||||| ||| Sbjct 1200543 TCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGACA 1200484 Query 34971 AAGATCTGCATATT 34984 |||||||||||||| Sbjct 1200483 AAGATCTGCATATT 1200470 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| |||||||| || | ||| | || || ||||| || || ||||| Sbjct 1200891 TCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAG 1200832 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| ||||||||| | || | ||||||||||| ||||| ||||| || Sbjct 1200831 ATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT 1200774 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || ||| || || | ||| ||||| || || || | |||||| | Sbjct 1200773 TCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGA 1200714 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 1200713 CAAAGATCTGCATA 1200700 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| || || | ||| | || || ||||| || || ||||| Sbjct 1201119 TCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAG 1201060 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| ||||||||| | || | ||||||||||| ||||| ||||| || Sbjct 1201059 ATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT 1201002 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || ||| || || | ||| ||||| || || || | |||||| | Sbjct 1201001 TCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGA 1200942 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 1200941 CAAAGATCTGCATA 1200928 >seq5446 Length=1541693 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || ||| | ||| |||| ||| Sbjct 1371110 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCC 1371169 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || || || ||||| ||| | || | |||||||| || | Sbjct 1371170 AGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 1371229 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| || || || | ||||| | ||| | || || || | ||| ||||| Sbjct 1371230 ATCTTGGCCTTCAC--AT--TCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGGT 1371285 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || || || ||||| ||||| Sbjct 1371286 CTTGCCGGTAAGGGTTTTAACGAAGATTTGCAT 1371318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610834460112