Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5380 159 4e-34 >seq5380 Length=870010 Score = 159 bits (176), Expect = 4e-34 Identities = 1088/1761 (62%), Gaps = 22/1761 (1%) Strand=Plus/Plus Query 47091 GGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCT 47150 || |||| | |||||| || | || || || ||||| || || ||||||| |||||| Sbjct 557703 GGCTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCG 557762 Query 47151 GCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||||| | | | || | | | || ||||| || ||||| |||| | | | Sbjct 557763 GCCATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGAC- 557821 Query 47211 TCTTCTGGGAGAT----TAG-TATTTTGAATAGATCCTCCgttttctataattttgtttt 47265 |||||| | ||| | | | |||||||| || || | | | || |||| ||| | Sbjct 557822 -CTTCTGCGGGATGGCTTCGATGTTTTGAATGGAGCCCCTGCTGGAAATTATTTGGTTCT 557880 Query 47266 ttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAA 47325 | | |||| ||| | | |||||| | | || | ||| | || || | Sbjct 557881 TCATATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCA 557940 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 ||||||||| || || || |||| | | || |||||| | ||||| || || | || Sbjct 557941 CTTGAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAG 558000 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 |||| || || || | ||| || ||||| ||||| || ||||| | || || | | | Sbjct 558001 ATTCGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGG 558060 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 || || || || | || | ||| | ||| ||||| || | | Sbjct 558061 AGTTCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTCG 558120 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATT-A 47564 ||| | ||| | || || || ||||| || ||||||| ||| | || || | Sbjct 558121 TTGGCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTA-CGGGGCTCCCTTCA 558179 Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 || |||| || ||||| | | | ||| || |||||||| || ||||| || | || Sbjct 558180 TAGGTTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAG 558239 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684 || || ||||||||||| | || | | | |||||| |||| | || | Sbjct 558240 TAAATAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGGAAT 558299 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 || | || || || || ||||| || || || | || | ||| | Sbjct 558300 CGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTCTC 558359 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 ||| || || || || || | ||||| | ||||||||| || || || || ||| Sbjct 558360 AAATTGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAAGA 558419 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT---T 47861 || |||| ||| ||| || ||||| || | || | | Sbjct 558420 TTTTTGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCGGGT 558479 Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 | || ||| | ||||| || || ||||| | || ||||| || | ||||| ||| | Sbjct 558480 GTGACGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCA 558539 Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 | || | || ||||| | || || || | || |||||||| || | ||| || || Sbjct 558540 GAGTACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGG 558599 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 || | ||| || || || || | |||||| |||| |||| ||||| | ||| Sbjct 558600 TTGCTCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGC 558659 Query 48042 GATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAGCTTTATTA 48098 | ||||| || | ||| | | | |||||| ||| ||| | || | Sbjct 558660 GCCTCAATAATCGCGAACCACAAGGACTGAGCCTT---AACTACTCGGTTGGCACGACCC 558716 Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCA 48158 || || ||||| || || | ||| |||||||| || || | |||| | | || Sbjct 558717 TCTTGCTCGTACTTCAAGTACAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCG 558776 Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218 || |||| || ||||||||| | ||||||||||| | | ||| | |||| || Sbjct 558777 GGGCATTTATGAGGACACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTCATGAAG 558836 Query 48219 ATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 | ||| |||||||| | || ||||| || | | | ||||| || || | Sbjct 558837 AGATCGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTG 558896 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 || | || || || || || || | | ||| | ||||||||| || | || || || Sbjct 558897 TTTTTCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCA 558956 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | | || || || || ||||| ||||| | ||| | ||| |||||| | || Sbjct 558957 AAGGCGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACC 559016 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458 || | ||| || || | |||||| || | |||||||| || |||| | | || | Sbjct 559017 CTCAGCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTGCCCTTT 559076 Query 48459 GCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 || | || | | | ||| | || |||||||||||| ||| || || | || | Sbjct 559077 GCCCGAATGCAATGCACATTCAGT--CCAATACCACCTGCCGATTTTGAAATCATGGCGC 559134 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 || | | | || | |||| || || || || | |||| | || || |||| Sbjct 559135 ACTGCTCCACGGATTTGAAAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGAAAC 559194 Query 48577 AACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAA 48636 | ||||| || || || || | | ||| | ||||| || |||||| ||| Sbjct 559195 ACGAAGACAACTGTGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAA 559254 Query 48637 ACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTA 48696 | || ||| || || | || || ||||| | | ||| ||| |||||| | || | Sbjct 559255 AGAATCGCTCGGACAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGTGGA 559314 Query 48697 TACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTT 48756 | || || | || ||||| ||||||| ||| || | ||| | || || || | | Sbjct 559315 TTCCAATTGCCACGCGCATCAACATATGTTGTGGGCGCTCAGCGATCTTTCCGTTCCTCT 559374 Query 48757 TCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTAT 48816 | | | ||||||| ||| | || ||||||||||||||||| ||| ||||||| || Sbjct 559375 TAAGCAAATATGATCGTTCGAGGGTCTTAAAACCAAAATAGTTATATCCAAAGTCGCGAT 559434 Query 48817 CATTAATAATTGATGAATTTA 48837 ||| || || || || |||| Sbjct 559435 CATAGATTATAGAGGAGTTTA 559455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562068370324560