Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1974 129 5e-24 seq5454 105 5e-17 seq4595 91.5 1e-12 >seq1974 Length=2389 Score = 129 bits (142), Expect = 5e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 ||||||||| |||| ||| || | ||||| || |||| ||| | || || || || Sbjct 362 AAAATGAAAGAAACCGCCGAGGCGTACCTTGGTGAAAAAGTGACGCAGGCCGTGATCACG 421 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || || || ||||| || | || ||||| ||||| |||||||| || ||||||||| Sbjct 422 GTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCTACCAAAGATGCAGGCCGTATTGCT 481 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||| | || || ||||| ||||| ||||| || |||||||| ||||| ||||| Sbjct 482 GGTCTTGAAGTCCTGCGTATCATCAACGAACCGACGGCTGCTGCTCTTGCTTATGG 537 >seq5454 Length=2883911 Score = 105 bits (116), Expect = 5e-17 Identities = 383/592 (65%), Gaps = 18/592 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || || || || ||||| || || |||||||| | || | || || Sbjct 1048605 AGCTATTGGAATCGACTTGGGCACCACGTACTCGTGCGTTGGTGTCTTCCAGCACGGAAA 1048546 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || ||||| || ||||| || || ||| | || || ||||| || ||| | ||||| Sbjct 1048545 GGTGGAGATTATCGCGAATGACCAGGGCAACCGCACAACCCCATCCTACGTTGCATTCAC 1048486 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTAC 550167 || | || | || |||| || || || || | || | ||| || || || | Sbjct 1048485 CGATTCAGAGCGCCTAATTGGAGACGCTGCCAAGAACCAGGTGGCCA-TG--AACCCAAA 1048429 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 || | | || ||||| || || || ||||| | |||| | ||| | | | || Sbjct 1048428 GAACTCGGTCTTCGATGCCAAGCGATTGATTGGTCGCCGTTTCGACGATCCCAAGATCCA 1048369 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATAT--- 550284 || ||| |||||||| ||||| |||| | | || | ||| ||||| | || Sbjct 1048368 GGAAGACATGAAGCACTGGCCATTCCGCGTGATCAACGACAATGGCAAACCCAAGATGAG 1048309 Query 550285 --TGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATG 550342 || || | || | || | || | || | || ||| | || || ||| Sbjct 1048308 CGTGGAGTT---CAAGGGCGAGGAG--AAGCGCTTCGCTCCGGAAGAGATCAGCTCGATG 1048254 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGC 550401 || | | || ||||| | || ||| || ||| |||| || | ||||| ||||| Sbjct 1048253 GTGCTTACCAAGATGAAGGAGACGGCCGAGGCCTTT-TTGGGCACTACAGTTAAAGATGC 1048195 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || || || || || || || || || || || || || || || || |||||||| || Sbjct 1048194 CGTCATCACAGTGCCCGCCTACTTCAACGATTCTCAGCGACAGGCCACCAAAGATGCCGG 1048135 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 || || ||| | ||||| || || |||||||| || || || |||||||| || || Sbjct 1048134 CGCCATCGCCGGATTGAATGTGCTCCGCATTATCAACGAGCCCACCGCTGCTGCTCTGGC 1048075 Query 550522 ATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || || || || || || | | ||||| ||||| |||||||||||| Sbjct 1048074 CTACGGCCTGGACAAGAATCTTAAGGGAGAACGCAATGTGCTCATCTTTGAT 1048023 Score = 100 bits (110), Expect = 2e-15 Identities = 256/384 (67%), Gaps = 8/384 (2%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||| || ||||| || || || || || || || || |||||||||||||| ||| | Sbjct 1047527 AATCCGGACGAGGCGGTGGCTTACGGAGCTGCCATCCAGGCAGCTATTCTTTCGGGAGAC 1047468 Query 552270 ACTGATGAAAAACTACA--AAATAT-TG-TACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 || || | | | | || || || | || || ||||| |||||||||| || || Sbjct 1047467 ---GA-GAGCAGCCAGATCAAGGATGTGCTGCTGGTGGATGTGGCTCCTCTATCACTGGG 1047412 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | ||||| | ||| || | ||||| || || ||||| | || | | ||||| || Sbjct 1047411 AATTGAAACCGCTGGTGGAGTGATGACCAAGCTGATCGAGCGCAACAGTCGCATTCCCTG 1047352 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 || |||| || | || || | || || || | || || || || ||| | Sbjct 1047351 CAAGCAATCGAAGACCTTCACCACCTACGCGGACAACCAGCCAGCAGTGACCATCCAAGT 1047292 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 ||| |||||||| | | || || || || ||| | || || || ||| | Sbjct 1047291 TTTCGAAGGAGAGCGTGCTCTGACCAAGGACAACAATGTGTTGGGCACCTTCAATCTGAC 1047232 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || ||||| || |||||| | |||||||| | || || || || |||||| | ||||| Sbjct 1047231 CGGCATTCCGCCAGCTCCTAGGGGAGTACCCAAGATCGATGTCACCTTCGATCTGGATGC 1047172 Query 552566 CAATGGAATTTTGAATGTGACTGC 552589 ||||||||| ||||||| || || Sbjct 1047171 CAATGGAATCCTGAATGTTACCGC 1047148 >seq4595 Length=987418 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | ||| | ||| || || ||||||||||||| ||||| | Sbjct 267822 AGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGACAGAGTGCGC 267881 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||| || || ||||| || || || | |||||||| ||||||||||| || Sbjct 267882 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 267941 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || || ||||| ||||| ||| || || || | || | || || ||||| Sbjct 267942 TTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTCCG-ATGGCTCCACCTCCAGAGT 268000 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| || || || ||||| || ||||| Sbjct 268001 GATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028991702529460