Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4595 116 3e-21 seq5614 93.3 3e-14 >seq4595 Length=987418 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || ||||| || || || || || |||||||||| | ||| | | Sbjct 267596 ACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCC 267655 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || || || |||| |||||| ||||| || ||||| || || || Sbjct 267656 ATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTT 267715 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| || || ||| | || | ||||| || | ||||| || ||||||| Sbjct 267716 ATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGAT 267775 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || ||||| | || || || || |||||||| | |||| ||| Sbjct 267776 GGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATTCCTCCGCGCAGA 267824 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || ||||| | ||||| || || || ||||||||||| | Sbjct 267811 TTCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAG 267870 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| || | ||||| || || || |||| |||||| ||||| || | Sbjct 267871 ACAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 267930 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || || || || ||||| |||||| | || | |||||| || | |||| Sbjct 267931 GAATTCCCTCCTTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTCCA 267990 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | || ||||||| || || || || | || || || || ||||||||| Sbjct 267991 CCTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCATG 268040 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | | ||| | || || || | ||||| || || || || |||||||||| Sbjct 267356 TCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGA 267415 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||| | | || |||| |||||| || || || ||||||||||| ||||| || || Sbjct 267416 CAAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGG 267475 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 || || || || || || ||||| || || | || | |||||| |||| || || Sbjct 267476 GATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTAC 267535 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||||| ||||| ||||| | || || || || ||||||||| Sbjct 267536 CTCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCATG 267584 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || ||||| ||||| || || || ||||| |||| | ||| | | Sbjct 268280 ACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACC 268339 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||| || || || |||| |||||| ||||| || ||||| || || || Sbjct 268340 GTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTT 268399 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| || || ||| | || | ||||| || | ||||| || ||||||| Sbjct 268400 ATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGAT 268459 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| | || || || || |||||||| Sbjct 268460 GGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 >seq5614 Length=3457230 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||||| || ||||| || ||||| || | | ||| | | || || Sbjct 1200681 ACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCA 1200622 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| ||||| ||||| || || || ||||| || || || || || Sbjct 1200621 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1200562 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | ||| || || | |||| || ||| Sbjct 1200561 ATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTCTTG 1200502 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||| || ||||| |||||||| Sbjct 1200501 CCGGTTAAAGTCTTGACAAAGATCTGCAT 1200473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396250610234178