Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5653 127 2e-24 seq4595 118 8e-22 seq5614 111 1e-19 >seq5653 Length=912194 Score = 127 bits (140), Expect = 2e-24 Identities = 250/367 (68%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA-ACCTCTAC 9059 ||||| ||||| || |||||||| ||||| | |||||| || | || ||| | Sbjct 473993 CCGGTGGACCCGAAACCTCCCTCGCCGCGTTCGGTGTCC-TCCAGTTTGTCGACCAGCTC 473935 Query 9060 CAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCAC 9119 ||| |||| |||||| | || || || || || ||||| | ||||| ||||| Sbjct 473934 GAGTTCCGGATGAAAGATGCGCTCGCAGATGAACTGGGCAATGCGATCCCCGCGCTTCAC 473875 Query 9120 GACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTC 9179 | || || ||| || || ||||||| ||| || || | ||| || | ||||||||| Sbjct 473874 CTCGAACTCCACGTCCGAGTGGTTGAACAACACGACACCAAGGTTGCCGCGGTAATCCTC 473815 Query 9180 ATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 ||||| ||| || || ||||| |||||||||| ||| || || ||||| || || || || Sbjct 473814 ATCGACCACGCCGGCGCCCACATCGATGAAGTTCTTAACGGCGAGTCCGGACCGTGGAGC 473755 Query 9240 GATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTT 9299 | || ||||| | ||| |||| | || ||| ||| |||||| | || | |||| Sbjct 473754 CACCCGGCCGTACGAACCCTCCGGAACCTGGACCTGCAGATCGGTCTTCACGATGGCCTT 473695 Query 9300 GCCGTGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTGTC 9359 || | |||| ||| |||||| |||| || |||| || || || || | Sbjct 473694 TCCTCGAGCAGGAACCACCAAATCGTAGGCGCTACGCAGGTCAACTCCTGCCGCTTTGGC 473635 Query 9360 CGATCCC 9366 |||||| Sbjct 473634 GGATCCC 473628 >seq4595 Length=987418 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || || || ||||| || || | | | ||| Sbjct 268506 AGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGA 268565 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| ||||| ||||| | |||| |||||| Sbjct 268566 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 268625 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || || | ||| ||||||| ||| Sbjct 268626 TTGTCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTA 268685 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| || || ||||| |||||||| Sbjct 268686 ATGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 268723 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | || ||| || || |||||||||||||| ||| | || Sbjct 267822 AGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGACAGAGTGCGC 267881 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||| ||||| ||||| | |||| |||||| Sbjct 267882 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 267941 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || |||||| | | || || || | ||||||||||| || Sbjct 267942 TTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTCCACCTCCAGAGTG 268001 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| || || || || |||||||| Sbjct 268002 ATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || || || |||||||| || | | | || Sbjct 267594 AGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGT 267653 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||| ||||| ||||| | |||| |||||| Sbjct 267654 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 267713 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || | ||||||||||| || Sbjct 267714 TTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTG 267773 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| || || || || |||||||| Sbjct 267774 ATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 267811 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || || || || || ||||| || || | | | ||| Sbjct 268278 AGACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAAGTACGA 268337 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| ||||| ||||| | |||| |||||| Sbjct 268338 CCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 268397 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || | ||||||||||| || Sbjct 268398 TTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTG 268457 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || || || |||||||| Sbjct 268458 ATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || || || || || ||||| || || | | | || Sbjct 268050 AGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGT 268109 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| ||||| ||||| ||||| | |||| |||||| Sbjct 268110 CCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 268169 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | || || | ||||||||||| || Sbjct 268170 TTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTG 268229 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| || || || || |||||||| Sbjct 268230 ATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | || ||| || || || |||||||| || | | | ||| Sbjct 267366 AGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGA 267425 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||| ||||| || |||| ||||| ||||| | || | |||||| Sbjct 267426 CCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGGATTCCCTCC 267485 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || | | || || |||| ||| ||||||| || Sbjct 267486 TTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACCTCCAGAGTG 267545 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | || || || || |||||||| Sbjct 267546 ATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 >seq5614 Length=3457230 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | ||| |||| |||||||| | || ||| ||||| || ||||| || | Sbjct 1201157 CGCCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGG 1201098 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | ||| | || |||| || | |||||| || ||||| |||| |||||| || || | || Sbjct 1201097 ACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGG 1201038 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| ||||||||||| ||||| || ||| | | | || || | ||| | Sbjct 1201037 GAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGA 1200978 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || || || || |||||||| || ||||| |||||||| Sbjct 1200977 CCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| | || ||| ||||| || ||||| || || ||| | || Sbjct 1200918 AGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGT 1200859 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || ||||| |||| |||||| || || | ||||| |||||| Sbjct 1200858 CCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 1200799 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||||| || Sbjct 1200798 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTG 1200739 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || ||||| |||||||| Sbjct 1200738 ATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| | || ||| ||||| || ||||| || || ||| | || Sbjct 1200690 AGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGT 1200631 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || ||||| |||| |||||| || || | ||||| |||||| Sbjct 1200630 CCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 1200571 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | || ||||||| || Sbjct 1200570 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTG 1200511 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || ||||| || ||||| |||||||| Sbjct 1200510 ATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCAT 1200473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910886036542