Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq1575 87.8 3e-12 seq2223 84.2 4e-11 >seq1575 Length=1066 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 83 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 142 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 143 CCTGCCCCCGCAACCA 158 >seq2223 Length=1402 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 115492 CTGGACAGCCAGCCGGTTTCGGTCCAGTGATCGAAGATGCCTTCACGGCTGTC-TTCGG- 115549 |||| ||||||| | ||||| ||||| | ||| |||||||| | || || |||| Sbjct 1402 CTGGCCAGCCAGACATTTTCGTTCCAGAGGCCGACAATGCCTTCCAGACTATCATTCGCT 1343 Query 115550 -CGGTCGAGAGGAAGCAGGAAATAGGCAAGCCGCGCGACGTGCCACCGTTGCTGAGCAAC 115608 | || |||||||||||||| |||| |||||||| |||||| || ||| ||| | | Sbjct 1342 TCATTC---AGGAAGCAGGAAATCGGCAGGCCGCGCGTCGTGCCGCCATTGGAGAGAACC 1286 Query 115609 GGAGTGGCGAACATGAACCAG 115629 || || ||| |||||||||| Sbjct 1285 GGCGTTGCGGGCATGAACCAG 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895701972001680