Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5351 253 4e-62 seq5380 181 2e-40 >seq5351 Length=991022 Score = 253 bits (280), Expect = 4e-62 Identities = 558/824 (68%), Gaps = 13/824 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| || ||||||||||| || |||| ||| || |||| Sbjct 257269 CTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGCGAAATCATCTC 257328 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| |||||||| ||||| || | | | | ||||| || |||||| Sbjct 257329 CATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACCAGCAA 257388 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || || ||| ||||||| || | ||||| || | |||||||| || ||| Sbjct 257389 ACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGTT 257448 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| |||| || | ||||| ||||||| ||| || ||| || || | | || | Sbjct 257449 CACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCGCGAATGATTTC 257508 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCA-GGTGCTTGGCATAGAGCATGCAG-GCA 48136 | | ||| ||| || | | ||| || |||||| | | | || ||| || Sbjct 257509 AATGATGCGCT-CTCGCTTGGGTCGCTGCACAAGGTGCTGGA---ACATCA-GCACTGCG 257563 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 || || | |||| || ||||||| ||| ||| ||||||||||| || || ||| Sbjct 257564 AAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGC 257623 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | || || ||||||||||| | ||||| ||| |||||||||||| Sbjct 257624 ATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCT 257683 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 ||||| || || || ||| ||| | ||| ||||| || |||| ||||||||| Sbjct 257684 TCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTGGCTGACTTGGAGGAGATCCAG 257743 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC 48376 || | |||||||| ||||| ||| | |||||||| || ||||| ||| || Sbjct 257744 GACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGCGTTGAACAGG 257803 Query 48377 TTCTTGCACTCACCTGCGTC-CGCA-ACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | || | || |||| ||| | || || || |||| ||||||||| | Sbjct 257804 TACTCTCGCTGG--TGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTACATCTCCG 257861 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 ||||||| ||||| || ||||||||||| ||||||||| | |||||| | ||||| Sbjct 257862 AGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTGATCTGCA 257921 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || | ||| | ||||| ||||||||||||||| || ||||| || || || |||| Sbjct 257922 CCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGCTGCGAAGA 257981 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC-ATTCCAGCCCTGT 48613 |||| | || || || || |||||||||| || | | ||| | |||| | Sbjct 257982 AGGCCAACACGTGCGAAATAAAGTGGCGCTCGTCGTCCTTCA-AGCGGTGCCAGTCGGTC 258040 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| ||||||||| || ||||| |||||||| || || Sbjct 258041 AGGTCCTTGGACAGGTCCACCTCCTCCACGGTCCAGAAAGAGGC 258084 >seq5380 Length=870010 Score = 181 bits (200), Expect = 2e-40 Identities = 737/1145 (64%), Gaps = 40/1145 (3%) Strand=Plus/Plus Query 212900 CAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGA 212959 || |||| ||||||| | || || || || || || || | || ||||| || | Sbjct 557924 CAAGTGATGGTTGACCACTTGAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGT 557983 Query 212960 AGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCAT 213019 || || ||||||| |||||||| |||| |||||| ||||| || |||||||| Sbjct 557984 CGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCAT 558043 Query 213020 GGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT-GAGGCGCCGAAGCTCTG 213078 |||||||| || || |||||| || ||||||| ||| || | | |||| Sbjct 558044 AGGAGCCACAAGCAGGGAGTTCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTG 558103 Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 || ||||||| ||| | || | | | || || ||||||||| |||||| | Sbjct 558104 CC-AGTCCCA-----CAG---GTTCGTTGGCGTTTT-GTCCCACATGTCGTACTGCAGAA 558153 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 | || || || |||||||| || | || | ||| || |||| || ||||||| Sbjct 558154 TACCCTTACTTACGGGGCTCCCTTCATAGGTTTCGTATGGACCATCAATCTCAGCCAGCT 558213 Query 213199 CGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA------ 213252 | || |||| || || ||||||| || ||||||||||||| | || | Sbjct 558214 CACAACTGGCCTCCAAAGCGCCGTAGTAAATAGTTTCAAATATCTGCTGATTCAAAAGAC 558273 Query 213253 --GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAG 213310 ||||||| | | | | | ||| ||| |||| | || | ||||| | Sbjct 558274 CAGCTTCTTCACTTT------CAT-AGGGGAATCG-CATGAGAATCAAGGCGTCAGCGAA 558325 Query 213311 CCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAA 213370 ||||| || |||||||| | ||| | ||||||| || || || |||| || Sbjct 558326 ACCCTGAACTCCGATGCCCACGGGGCGATGTCTCAAATTGGATTTCTTTGCCTCCGGCAG 558385 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||| ||| |||| ||||| |||||||| || || |||| || ||||| || | Sbjct 558386 GGGATAATAGTTTATATCGATTATCTTGTTAAGATTTTTGGTGACCGTCTTGGTAACTTC 558445 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGAT 213490 || | || | || | || || | | | || || ||| |||||||| Sbjct 558446 TTTTAGTTTCTTGAAATCGTAC--GTCTTCTCGGGTGTG-ACGAACATGTTAAGGGCGAT 558502 Query 213491 GCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCA 213550 | |||| |||||| || || | ||| | | | | |||||| | ||| || ||||| Sbjct 558503 GGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGTACTCTACGATTTCTGTGCA 558562 Query 213551 CAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATC 213610 ||||||||||| ||| ||||| | ||||| ||||| ||| |||| | ||| Sbjct 558563 AAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATC 558622 Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAG 213670 || ||||||| || || || || || | ||| | | | | ||| | ||| | Sbjct 558623 TTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCTCAATAATCGCGAACCACAA 558682 Query 213671 GTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAG 213730 | || ||||| || || || || || || | || ||||||| ||| || Sbjct 558683 GGACTGAGCCTTAACTACTCGGTTGGCACGACCCTC--TTGC-TCGTACTTCAAGTACAG 558739 Query 213731 CTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG-ATGCGGGACACATGA 213789 || | ||||||| |||||| || || || || || || ||| || |||||||| Sbjct 558740 CTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGGCATTTATGAGG-ACACATGA 558798 Query 213790 GGCTCCAGTCCCCGTCATC-TCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCG 213848 || ||| ||| ||| | ||| || | | |||||| || || || | ||||| ||| Sbjct 558799 GGGACCAATCCTCGTTGGCCTCT-ACACGTTTCATGAAGAGATCGGGTATCCACAAGGCG 558857 Query 213849 GTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAG 213908 ||| | ||| | | | |||| ||| ||| | |||||| || || || || Sbjct 558858 TAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTGTTTTTCTTGAGCTCGAGGAAC 558917 Query 213909 TCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCG 213968 || |||| |||| ||||| ||||||| ||| || ||||||||||| || | ||||||| Sbjct 558918 TCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAGGCGCCAGGACGCTTGCCG 558977 Query 213969 ---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCG 214025 ||||| ||||| || || || |||| |||| | ||| | ||| ||||| || Sbjct 558978 CCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACCCTCAGCATGGGAACCAGACCA 559037 Query 214026 TTGGA 214030 ||||| Sbjct 559038 TTGGA 559042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931465799503360