Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5646 143 2e-28 seq5380 127 1e-23 seq5580 120 2e-21 seq1974 116 2e-20 seq4595 86.0 4e-11 >seq5646 Length=1495928 Score = 143 bits (158), Expect = 2e-28 Identities = 366/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 290632 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCATGGCAAGGTCG 290573 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 290572 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 290513 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || ||||| || || | || | || || || | || | Sbjct 290512 CGGAGCGTCTGATCGGCGATGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 290453 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | |||||||| || || || || || || | || || || || | Sbjct 290452 TCTTCGATGCCAAGCGTTTGATTGGCCGCAAGTTCGACGACTCCGCCGTGCAGTCGGACA 290393 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | || | || || || | || || | | | Sbjct 290392 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGTGGACGGCAAGCCCAAGATCGAGGTGACCT 290333 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 290332 ACAAGGATGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTGACCAA 290275 Query 474691 AATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | ||||| ||| | || | ||| ||||| || || | || || || ||| Sbjct 290274 GATGAAGGAGACCGCTGAG-GCCTA-CCTGGGCAAGACTGTGACCAACGCTGTCATCACT 290217 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || || || ||||| || || || ||||| |||| || || Sbjct 290216 GTGCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGATGCTGGAACCATCGCC 290157 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| ||||| | ||||| || || || || || || || || ||||||| ||||| Sbjct 290156 GGTCTGAATGTGCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATTGCTTACGGTCTG 290097 Query 474869 GATAAGAA 474876 || ||||| Sbjct 290096 GACAAGAA 290089 >seq5380 Length=870010 Score = 127 bits (140), Expect = 1e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||| || | || ||||| ||| ||| ||| |||||||||| || Sbjct 656803 ACGAAGTCGGAGCACCAAGTGCAAAGTGGACTC-CTTCTGAATG-TTATAATCAGAGAGG 656746 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | |||||| || ||||| ||||| || || ||||| || ||||| ||||||||| Sbjct 656745 GTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATT 656686 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||| ||||| |||||||| ||||||| ||| |||||||| | || ||| Sbjct 656685 CCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCA 656626 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || ||||| ||||||||||| || || Sbjct 656625 AGGGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 656585 >seq5580 Length=1179668 Score = 120 bits (132), Expect = 2e-21 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 817092 TTTTAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGAT 817151 |||| | ||||||||||| || |||||||| ||| |||||||| |||| |||||| ||| Sbjct 1005552 TTTTGGTCGATTTTTCATCGCCCAATATTGCCAAGCAAATGCATGTTGGTCACTTGCGAT 1005493 Query 817152 CTACAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAA 817211 | ||||| ||||| ||||| ||||| | ||| || ||| || || || Sbjct 1005492 CCACAATTATTGGCGAATCGATTTGTCGGCTATTGGAGTTTCTTGAGCACGACGTGGTCC 1005433 Query 817212 GAATAAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 | || |||||| |||| |||||||||||||| ||||| ||||| ||||| Sbjct 1005432 GTATTAATCATCTTGGCGATTGGGGAACACAGTTTGGCATGTTGATTGC 1005384 >seq1974 Length=2389 Score = 116 bits (128), Expect = 2e-20 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||| | | |||||||||| ||||||| ||| | || ||||| || |||| || | || Sbjct 353 GTTCTGGGCAAAATGAAAGAAACCGCCGAGG-CGTACCTTGGTGAAAAAGTGACGCAGGC 411 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || ||||| || || ||||| ||| | || ||||| || || |||||||| || Sbjct 412 CGTGATCACGGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCTACCAAAGATGCAGG 471 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||||| |||||| | || | ||||| || || ||||| || || || || ||||| Sbjct 472 CCGTATTGCTGGTCTTGAAGTCCTGCGTATCATCAACGAACCGACGGCTGCTGCTCTTGC 531 Query 474859 TTATGGTCTTGATAAGAA 474876 |||||| | || ||||| Sbjct 532 TTATGGCATGGAAAAGAA 549 >seq4595 Length=987418 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||| ||||| || || || || ||||| || ||||| ||||||||||| |||||| Sbjct 268569 TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 268628 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || ||||| || ||| ||| || || ||||| | | | | || |||||||| Sbjct 268629 TCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATG 268688 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || | ||||| || || || || Sbjct 268689 GTTTTTCCAGTCAAGGTCTTCACAAAGATCTG 268720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267932383021592