Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2145 98.7 1e-15 >seq2145 Length=43147 Score = 98.7 bits (108), Expect = 1e-15 Identities = 255/389 (66%), Gaps = 0/389 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || | ||| ||||| || || ||||| ||||||||||| || || || Sbjct 11062 ACGCCAATTGGCCCCATGCCCGGACCACCGCCACCATGCGGAATACAGAACGTTTTGTGC 11003 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || | ||| | ||||| |||| || |||| || || || || ||||| || Sbjct 11002 AGGTTGAAATGGCTGACATCGCCACCGTAATCACCGGGGCGGGCAAGGCCCACCTGCGCG 10943 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| ||||| || || | ||| || | | ||| || Sbjct 10942 TTCATGTTCGCGCCATCCACATACACCTGCCCTCCGGCCTGATGCACCAGATCACAGATT 10883 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | ||| || |||||| || ||||| || || ||||| || ||||| | || Sbjct 10882 TCACGCATGCTTTCTTCAAACACGCCATGGGTGGAGGGATAGGTGATCATCACTGCGGAC 10823 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATCA 138482 || ||| | | | | |||||| | | |||| | || || |||||| | Sbjct 10822 AGATCAGCCGCGTGAGCGGTCACTTTCTCCCGCATGTCTTCCAGATCAATATTGCCACCG 10763 Query 138483 TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTT 138542 |||||||||| || | ||||| ||||| || ||||| || || || || || Sbjct 10762 GCATCACACTTCACCACCACAACCTTCATGCCCGCCATCTGGGCGGAGGCCGGGTTGGTG 10703 Query 138543 CCATGTGCTGACTCTGGTATCAGACATAC 138571 || || || || | || |||||||| || Sbjct 10702 CCGTGGGCGGAGGCCGGAATCAGACACAC 10674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578956755540080