Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq1678 154 5e-33 seq1747 152 2e-32 >seq1678 Length=14721 Score = 154 bits (170), Expect = 5e-33 Identities = 395/591 (67%), Gaps = 29/591 (5%) Strand=Plus/Plus Query 44405 ATCGCATCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGG 44464 ||| | || |||||| | |||| || | ||| || || || ||||||| ||| Sbjct 13993 ATCACTTCCGCATAGGCGCGGATTTCGTACTGCGCGTGCGGGTCAAGCCGCAGGGCAAGG 14052 Query 44465 AAGTGGAAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGC 44524 ||||| | ||||| || || ||||||||||| |||||||| |||||| || | || | Sbjct 14053 AAGTGCATCAGGTTATGCAGATCAATCTTCCAGTACCATTGCGTGTAGGTGTTCAGCGTC 14112 Query 44525 AAGTTCATGCGGGCCAGTTCGCGGGCCAAGCCGT--CCT--GACCGTCATCGCTGATCAT 44580 | ||| || ||||||||||| || |||| |||| ||| | |||| || | ||| Sbjct 14113 AGGTTGATACGGGCCAGTTCACGCGCCAGACCGTAGCCTTCGTCCGTATTC----AGCAT 14168 Query 44581 CTCTTCATAGTGATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAGTGTAGGACCCGCTG 44640 | |||||| | |||| | | |||||| || || | || ||| | Sbjct 14169 TTTTTCATAATTGCTGTAGGTGCGCATGGCGTCATTGCGCAAAATATCCAGCACCTCC-- 14226 Query 44641 AGCCTCAGCC---CCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTTCGA-CT 44696 ||| | ||| || | || || || |||||||||| ||| | |||| || Sbjct 14227 -GCCGCGGCCTCGCCTTCCAGCACGGCCCCA---CGGCCCTGCCGGTTGAT-TTCGCTCT 14281 Query 44697 GGGATGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATGATCGAATAGCGGG 44756 | | || | | || || || | |||||||||| || || |||||||||| Sbjct 14282 GCGCCGCCATGTGTTCAGGCGCGGGCAAATAGAACTCACTGTCCAGAATGGAATAGCGGG 14341 Query 44757 CTGAGTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAAACACGG 44816 | || ||||| |||||| ||||| | ||||| || ||||| || ||||| | || | || Sbjct 14342 CAGAATATTCGTTCACGCTGGCCATACGGTGGCGAATCCACTGCCGGGCAATGAAGATGG 14401 Query 44817 GCAGTTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAATGGCGCA 44876 |||||||||| |||| ||||||||||| ||||||||| || || | || |||| Sbjct 14402 GCAGTTTGACGTGAAACTTGATCTCACACATCTCAAACGGTGAGGAATGGCGGTGCCGCA 14461 Query 44877 TAAGGTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCT--TGGTGCCCTGACCGTAGGA 44934 | ||||| ||||| || | ||| | | || ||| | ||||||| | |||||||| Sbjct 14462 TCAGGTAACGGATCAG--CCCGGCATCTTCAGAAACCTTGCGGGTGCCCCGGCCGTAGGA 14519 Query 44935 TACGCGGGCCATCTGGACGATAGCG---CCGTCCGTGCCCATGTAGTCGAT 44982 ||||| || ||| || || ||| ||||| |||||||| || || Sbjct 14520 AACGCGTGCTGCCTGCACAATGGCGGAATCGTCC---CCCATGTAATCAAT 14567 >seq1747 Length=3787 Score = 152 bits (168), Expect = 2e-32 Identities = 412/618 (67%), Gaps = 22/618 (4%) Strand=Plus/Minus Query 44376 GCGGGACCCATGATTTGCAGA--TGTCGGCTATCGCATCGGCATAGACACGGACCTCTTT 44433 |||| ||||||| | |||| | || || || || || ||||| || |||| || | Sbjct 3087 GCGGCACCCATGCAT-GCAGGATTTTCAGC-ATGGCTTCCGCATAAACCCGGATTTCATA 3030 Query 44434 CTGGGCATGTTCATCGGCCCGCAGGCGCAGGAAGTGGAAGAGGTTGTGTAGGTCAATCTT 44493 ||| ||||| || ||||||| ||| || || | |||||||| || |||||||| Sbjct 3029 CTGCGCATGCGGGTCCAGCCGCAGGGCCAGAAAATGCATCAGGTTGTGCAGATCAATCTT 2970 Query 44494 CCAATACCATTGGGTGTAGACATTGACCGGCAAGTTCATGCGGGCCAGTTCGCGGGCCAA 44553 ||| ||||| ||||| ||| || || | || ||| ||||| ||||| || || |||| Sbjct 2969 CCAGTACCACTGGGTATAGGTGTTCACAGTCAGGTTGATGCGCGCCAGCTCACGCGCCAG 2910 Query 44554 GCCGTCCTGACCGTCATC---GCTGATCATCTCTTCATAGTGATCATAGGCGTTCTGGGC 44610 |||| | | || || ||| | ||| ||||| | |||| | ||| Sbjct 2909 ACCGTAGCCATCCTCTTCCGTGCTCAGCATGGTCTCATAATTGCGGTAGGTGCGGATGGC 2850 Query 44611 GTCGTTCATCAGGTAGTGTAGGACCCGCTG-AGCCTCAGCCCCCTGAAGAACATTATCAT 44669 || | | ||| | | ||| || | ||| ||| || || || | | || Sbjct 2849 ATCATCCCGCAGAATATCCATGACG-GCAGCAGCATCATCCGGGGCCAGCACGTCACCA- 2792 Query 44670 CGCGGCCCTGCCCGTTCACCTTCGACTGGGATGCGAGATCTT--GGGGACTTGGGATGTA 44727 |||||||| | |||||| ||||| || | || | |||| | || ||||| Sbjct 2791 --CGGCCCTGACGGTTCACGGCACTCTGGGCCGCCATATGGTCCGGGGCC--GGAATGTA 2736 Query 44728 GAACTCACCCGGCATGATCGAATAGCGGGCTGAGTATTCATTCACGTTGGCCGTCCGGTG 44787 ||| |||| | || ||||| ||||| || ||||| |||||| ||||| | ||||| Sbjct 2735 GAATTCACTGTCGAGAATGGAATAACGGGCAGAATATTCGTTCACGCTGGCCATACGGTG 2676 Query 44788 ACGGATCCATTGGCGGGCCACAAACACGGGCAGTTTGACATGAAGTTTGATCTCACAACC 44847 |||||||| || || || ||||| | ||||||||||| |||| ||| ||||| || Sbjct 2675 GCGGATCCACTGCCGCGCTACAAAGATCGGCAGTTTGACGTGAAATTTCATCTCGCACAT 2616 Query 44848 CTCAAACGGGCTGGTGTGCCAATGGCGCATAAGGTAGCGGATTAGGTCGCGGTCCTTGCT 44907 |||||||| || || | ||| ||||| ||||||||||| || | ||| | | Sbjct 2615 TTCAAACGGCGAGGAATGACGATGCCGCATCAGGTAGCGGATCAG--CCCGGCATCTTCC 2558 Query 44908 GACACCCTTG---GTGCCCTGACCGTAGGATACGCGGGCCATCTGGACGATAGCGCCGTC 44964 || | ||||| ||||| | |||||||| ||||||||| ||| || || ||| || Sbjct 2557 GAGA-CCTTGCGCGTGCCGCGTCCGTAGGAAACGCGGGCCGCCTGCACAATGGCGGAATC 2499 Query 44965 CGTGCCCATGTAGTCGAT 44982 ||||| ||||| || Sbjct 2498 ATCCCCCATATAGTCAAT 2481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182131554328160