Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5380 140 1e-27 seq5414 120 9e-22 seq5454 84.2 6e-11 >seq5380 Length=870010 Score = 140 bits (154), Expect = 1e-27 Identities = 549/859 (64%), Gaps = 11/859 (1%) Strand=Plus/Plus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| || |||||||||||||| || || || |||||||| || ||||| | ||| Sbjct 558317 GTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTCTCAAATTGGATTTCTTTGC 558376 Query 155465 CTTCTTGTTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATAC 155521 || | || ||| | || | ||| || || || || | |||| || ||| Sbjct 558377 CTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAAGATTTTTGGTGACCGT--- 558433 Query 155522 CTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACC 155581 |||||| || ||| || |||| | || | || || || | || ||||| Sbjct 558434 CTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCGGGTGTGACGAACATGTT 558493 Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAA 155640 ||| | || || |||| || ||||| ||| |||| | || || | ||| ||||| | Sbjct 558494 AAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGA-GTACTCTACGA 558552 Query 155641 TCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGT 155700 | || ||| ||||| | |||||| ||||| | ||||| |||||| || | || Sbjct 558553 TTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGCTCTTCCGGT 558612 Query 155701 TACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCT 155760 | || ||||| || | || || || || |||| || |||| ||| || || | |||| Sbjct 558613 TGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCTCAATAATCG 558672 Query 155761 TTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCA 155820 | ||| | | | || |||| | |||| | || || ||| || |||| Sbjct 558673 CGAACCACAAGGACTGAGCCTTAACTACTCGGTTGGCACGACCCTCTTGCTCGTACTTCA 558732 Query 155821 TATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGC 155880 |||||| || | || || || || ||| || || ||||| |||| || | Sbjct 558733 AGTACAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGGCATTTATGAGGAC 558792 Query 155881 AAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAA 155940 | | || |||||| | || | |||||| | ||| || | ||| ||| | Sbjct 558793 ACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTCATGAAGAGATCGGGTATCCACA 558852 Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 || ||||| | ||| | ||| ||| || | ||| || ||| ||||| | Sbjct 558853 AGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTGTTTTTCTTGAGCTCGA 558912 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCT 156060 ||| || | ||| | ||| ||||||||| || |||||||| ||| | || Sbjct 558913 GGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAGGCGCCAGGACGCT 558972 Query 156061 TGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 |||| || |||||| |||||||| ||| || || ||||| | ||||| |||| | Sbjct 558973 TGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACCCTCAGCATGGGAACCA 559032 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 ||||||||| ||||||||||| |||| ||| | || || |||| ||| | Sbjct 559033 GACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTGCCCTTTGCCCGAATGCAATGCA 559092 Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 || |||||||||||||||| | |||| ||||| ||||| | || || | |||| Sbjct 559093 CATTCAGTCCAATACCACCTGCCGATTTTGAAATCATGGCGCACTGCTCCACGGATTTGA 559152 Query 156238 AAATACCTTCAATAGAATC 156256 |||| || || || || || Sbjct 559153 AAATGCCCTCGATCGAGTC 559171 >seq5414 Length=687357 Score = 120 bits (132), Expect = 9e-22 Identities = 186/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| | |||||| ||||| ||| Sbjct 305402 TCCATAGCCTTTATGAGACGACGCTGGATGTAACCGGTTTCGGCTGTTTTCACAGCGGTA 305461 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| ||||| || |||||| | | ||| || || || Sbjct 305462 TCGATAAGACCCTCACGACCGCCCATGGCGTGGAAGTAGAACTCCGAGGGAGTCAGGCCG 305521 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 | | | ||| |||| ||||| || |||| |||||| || ||||||| |||| | Sbjct 305522 GCCAGGTACGAGTTCTCCACGAAGCCTCGCGACTCGGGACCGTAATCGTC---CTTGATG 305578 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| ||||| || | || | ||||| ||||| || || || || ||||||||| Sbjct 305579 AAGTGGGGCAGAGTGCGCTTGCGGAAACCGTACGGGATCCGTTTGCCCTCCACGTTCTGC 305638 Query 302812 TGTCCCAGGCACGAAATCATCTG 302834 || |||| || | ||| | ||| Sbjct 305639 TGACCCACACAAGCAATAACCTG 305661 >seq5454 Length=2883911 Score = 84.2 bits (92), Expect = 6e-11 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| |||||||| ||||| || |||||||| |||||||| || || || || | Sbjct 461131 CGATTGTCATACGGGATGGAATGGCGTGGGGATTAATGATGATATCCGGAGCCAAGCCTT 461072 Query 251903 CAGCAG-TGAAGGGCATATCCTTTTCCTCA--ATAATGTTTCCAATA-GTTCCCTTTTGT 251958 | |||| | |||| |||||||| ||| | ||| || | | | ||||| |||||| Sbjct 461071 C-GCAGGTAAAGGCCATATCCT---CCTGACGATACTGGATACCGCACGTTCCTTTTTGT 461016 Query 251959 CCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACC 252018 |||||||| ||| |||||||| || || ||| ||| || ||| | |||| | Sbjct 461015 CCGTGACGTGAAGCAAACTTATCGCCGATCTGCGGAATGCGCACTGAACGCACTCGAATC 460956 Query 252019 TTACAGAAGTTGTAACCATCACCGTTG 252045 || ||||| ||||| || || | |||| Sbjct 460955 TTGCAGAACTTGTAGCCCTCGCTGTTG 460929 Score = 84.2 bits (92), Expect = 6e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| |||||||| ||| || | || |||| || | ||| || | || |||| Sbjct 461634 GCGATTAGACCACAGAAATTGCAGATGTGCACGCGATACGGATCGGAGACCTCGAATAGA 461575 Query 251464 CGACCCTTGGTGAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | || | ||| | ||| || ||||| || ||| |||||||||||||| ||||| Sbjct 461574 CG-CTCTCGCAGAAACTGAGCGGCGCCGTGGGAGATCTGGCAATCACGCTCCATCTCACC 461516 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG 251567 |||||| | ||||| ||||| || | |||||| ||||||||| Sbjct 461515 GAAACGCAAGCCACCGTCGCGGGCACGACCCTCCATAGGCTGACG 461471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471709093007098