Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5381 140 4e-27 seq5469 132 6e-25 seq5351 127 2e-23 seq5414 105 8e-17 seq5655 91.5 2e-12 seq1583 91.5 2e-12 seq5380 87.8 2e-11 >seq5381 Length=2307182 Score = 140 bits (154), Expect = 4e-27 Identities = 365/546 (67%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 1852117 GTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTT 1852176 ||||| ||||||| ||||| | |||||||| | || |||| || ||||| Sbjct 1803693 GTGGATGCGCTTCTCGTAGCCCAACTGCGGCAGGTACTTCTCCGAGAAGGTGAAAATCTT 1803752 Query 1852177 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 1852236 ||||||||| || || |||||||| ||||| | ||||| || |||||| | ||||| Sbjct 1803753 GCGCTGGTCCACGCCACCGAACTGGGCATCGACCTTGAGGTACTCCTCGTCCAAAGCCTG 1803812 Query 1852237 CATGAGCGGG-TAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATCTTGACCACCTGAG 1852295 || | |||| || |||| | || || |||| || ||||||||||| | Sbjct 1803813 CA-GTCCGGGATAAAGCAAACCGGAGAGAAGTGGGTACTCCACCTGCTTGACCACCTCGG 1803871 Query 1852296 CGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGCGAGTCGGTAGAGGTCGA 1852352 | | ||||||| || ||||| | ||| |||| | || | | | ||||| || | Sbjct 1803872 CACCCGCCTTTTTAGCATCGTGCTGCGTGACCACG-GAGCTGAGCTT--GTAGACATCCA 1803928 Query 1852353 GCGCGTAGGCGCCGCCG-CACT-GGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAG 1852410 | | ||| | || | || | |||| ||| | || || |||| | | |||| Sbjct 1803929 GGGTGTA--CTCCTTGGACAGTTGGTAGTCGCTACCCTTGACGAACTTCAACTTGTCCAG 1803986 Query 1852411 CGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTG 1852470 ||| ||||| ||| ||||||||| |||||| | |||||| | || || | Sbjct 1803987 CGGAACGCCAATGGAACTGAGCATGGCTTTGATGACCTGCTCGTAGTACTGGGTGCGCAG 1804046 Query 1852471 TTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAG 1852530 || | ||| |||||| | ||| |||||| || | |||||||| |||||||| || Sbjct 1804047 CTCCAACAGAGACCACGGGGCCTTCATGTTGTCCAGATAGGCGTGCAAATCGGCAAACAG 1804106 Query 1852531 GATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTA 1852590 |||| | ||| || || |||| || || ||||| | || | |||||||||||||| Sbjct 1804107 GATCGTCACCTCGCATCCTGCCTTCAGGAAATCGGCGATCTTTGACATGGGCACAAAGTA 1804166 Query 1852591 GCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTCGGC 1852650 | | | || || |||||||||| ||| || ||||| || || | || ||||| || Sbjct 1804167 GGCGACATGTGGCTTGCCCGTCGTCGCTGTTCCCCAGTAAATCTTGAGATCTCGCTCTGC 1804226 Query 1852651 CATGAT 1852656 || ||| Sbjct 1804227 CAGGAT 1804232 >seq5469 Length=1487604 Score = 132 bits (146), Expect = 6e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||||||||| ||||||| || || | ||||| ||| || Sbjct 449912 AGAAGCGCACCGACGACATTATCTCGTGGGATGCCGATTTCCTGAAGGTCGATCAGGGCA 449853 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | | |||||| | || || || |||||||| || ||||||||| || ||||| ||| Sbjct 449852 CTTTGTTTGAGCTCATTCTGGCTGCCAACTATCTGGACATCAAGGGGCTTCTCGAGCTTA 449793 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 || ||| | |||||||| ||||||||||||||| | || ||||| ||||||||||||| Sbjct 449792 CCTGTAAGACAGTGGCCAATATGATCAAGGGCAAGACTCCGGAGGAAATCCGCAAGACCT 449733 Query 1592286 TTAACATCAAG 1592296 | ||||| ||| Sbjct 449732 TCAACATTAAG 449722 >seq5351 Length=991022 Score = 127 bits (140), Expect = 2e-23 Identities = 173/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| |||||||||||||||||||| ||| | |||||| | | Sbjct 257859 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTGATCT 257918 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| |||| || | |||| ||||| || ||||| ||| ||| |||| Sbjct 257919 GCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGCTGCGA 257978 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT-GAGCGACACCCAGT-G 869808 | || |||| |||||| |||||||||||||||||||| | |||| ||||| | Sbjct 257979 AGAAGGCCAACACGTGCGAAATAAAGTGGCGCTCGTCGTCCTTCAAGCG-GTGCCAGTCG 258037 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | | ||| | |||||||||||||| ||||||||| |||||||| |||| Sbjct 258038 GTCAG-GTCCTTGGACAGGTCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGCCT 258092 Score = 122 bits (134), Expect = 1e-21 Identities = 164/227 (72%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 869173 ATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCC 869232 |||| ||| ||||| | ||||| |||||| |||| || || ||||| ||||| Sbjct 257572 ATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGGCC 257631 Query 869233 GCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292 |||||||| ||||| || |||| | ||| ||||| ||| |||||||| || ||||| Sbjct 257632 TCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCTTCCACGGC 257691 Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTC-GAGGCCCTCCTTGTTGATCCACTTCA 869351 ||||||| |||||| ||||| | ||| || | || || | |||||| || Sbjct 257692 GGCAAAGGCGATGATGCGCTCCCCGAAGTTGGCTGA----CTTGGAGGAGATCCAGGACA 257747 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||||| ||||| | |||||| ||||| ||| ||||||||| Sbjct 257748 TGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGCG 257794 Score = 122 bits (134), Expect = 1e-21 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || || || |||||| | ||||| || ||| | | || || ||| || Sbjct 422165 AGAAGCGTACTGATGATATCTCGTCTTGGGATGCCGACTTTCTCAAGGTGGATCAGGGCA 422106 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| ||||| | ||||| || ||||||||||| ||||| || ||||| ||| | Sbjct 422105 CCCTATTTGAACTCATCCTGGCTGCCAACTACCTGAACATCCAGGGCCTGCTGGATGTCA 422046 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| ||||||||||||||||||||||||| ||||| |||| || ||| | || | Sbjct 422045 CCTGCAAGACTGTGGCCAACATGATCAAGGGCAAATCGCCGCAGGACATTCGCGACACAT 421986 Query 1592286 TTAACATCAA 1592295 | |||||| Sbjct 421985 TCGCCATCAA 421976 Score = 122 bits (134), Expect = 1e-21 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || || || |||||| | ||||| || ||| | | || || ||| || Sbjct 424931 AGAAGCGTACTGATGATATCTCGTCTTGGGATGCCGATTTTCTCAAGGTGGATCAGGGCA 424872 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| ||||| | ||||| || ||||||||||| ||||| || ||||| ||| | Sbjct 424871 CCCTATTTGAACTCATCCTGGCTGCCAACTACCTAAACATCCAGGGCCTGCTGGATGTCA 424812 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| ||||||||||||||||||||||||| ||||| |||| |||||| | || | Sbjct 424811 CCTGCAATACTGTGGCCAACATGATCAAGGGCAAATCGCCGCAGGACATCCGCGACACAT 424752 Query 1592286 TTAACATCAA 1592295 | |||||| Sbjct 424751 TCGCCATCAA 424742 Score = 93.3 bits (102), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||||| || | |||||||||||| |||||||| || ||||| |||| |||||| Sbjct 257272 GTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGCGAAATCATCTCCAT 257331 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | || ||||| || |||||| |||| | || | | | | |||| || Sbjct 257332 GAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACCAGCAAACG 257391 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 |||||| || |||||||| ||||| |||| || || ||||||||||| || ||| Sbjct 257392 GTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGTTCAC 257451 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 ||||| | ||| | | ||||| | ||| || | || || ||| ||||| Sbjct 257452 TGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCGCGAATGAT 257505 >seq5414 Length=687357 Score = 105 bits (116), Expect = 8e-17 Identities = 195/282 (69%), Gaps = 18/282 (6%) Strand=Plus/Minus Query 507598 GGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATG---AACCGGCAGCCGTCGCT 507654 ||| ||||| |||||||||| ||||| | ||||||| ||||| ||||| |||| Sbjct 306736 GGTGGAGCGGCACCTGCGCGA---CGACGACCTGGTGATTTTCAACCGACAGCCCACGCT 306680 Query 507655 GCACATGGGCTCCATGCTCATGCACAAGGTG---GTGCCCATGCCCGGGCGCACCATGCG 507711 ||||| | ||| | ||||| |||| |||| ||||| || || | || Sbjct 306679 GCACAAGATGAGTATGATGGGGCACAGGGTGAAGGTGC---TGCCCTGGTCGACGTTCCG 306623 Query 507712 ATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCT 507771 | ||||| || ||| ||||||||||||| || |||||||||||||||||||| Sbjct 306622 CATGAACCTCTCCTGTACGTCGCCCTACAACGCCGATTTCGACGGCGACGAGATGAACCT 306563 Query 507772 GCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGCT 507831 ||||||||| ||||| | | |||| |||||||| | | | ||| | | ||| Sbjct 306562 GCACGTGCCGCAGTCGATGGAGACGCGAGCCGAGGT---GGAAAACATCCACATCACGCC 306506 Query 507832 CA---AGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870 || ||| | |||||||||| || |||||| |||| || Sbjct 306505 CAGACAGATTATCACGCCGCAGGCGAATAAGCCCGTCATGGG 306464 >seq5655 Length=3709542 Score = 91.5 bits (100), Expect = 2e-12 Identities = 230/344 (67%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 ||||||||| || ||||||||| || | ||| || ||||| | |||| | || Sbjct 1365375 GGGTCCGCCTGGAGTGGGCAAGACAACCACCATTCAATGCCTGGCAAGAATCCTTCTAGG 1365316 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | ||||| || ||||| ||||| || || | ||||| || | || || Sbjct 1365315 AGATAGTTACAAGGAGGCAGTCCTCGAGCTCAATGCTTCCAATGAGCGAGGAATTGATGT 1365256 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 |||||||| | |||||| ||| ||| ||| | || || || | ||| | Sbjct 1365255 GGTGCGCAACAAAATCAAGATGTTTGCCCAGCAAAAGGTT--ACTCTTCCACGCGGTAGA 1365198 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 || ||| | | ||||| |||||||| || || | ||| || || ||||| || || Sbjct 1365197 CATAAGATTGTGATCCTAGACGAGGCGGATAGCATGACGGAGGGAGCGCAGCAAGCTCTT 1365138 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||| | ||| |||||||||||| || || |||| |||||||| | Sbjct 1365137 CGTCGCACCATGGAGATTTACAGCAACACGACGCGATTCGCGTTGGCCTGCAACAC--CA 1365080 Query 1574193 TCG--ATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTG 1574234 || | | |||||||| || ||||| || || ||||| ||| Sbjct 1365079 GCGAAAAGATCATCGAGCCCATCCAATCGCGTTGTGCCATGCTG 1365036 >seq1583 Length=11539 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||||||||||||||| ||||| || ||| ||| || |||||| | || ||| Sbjct 8477 AGGCGCACGGCGGTCTGTATCTCACGACTGCTGATGGTAGATTTCTTGTTGTACTGGGCC 8418 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || || || ||| | | || || |||| ||||||||||| || |||||||| | Sbjct 8417 AGCCGACCAGCTTCGCCGGCAATCCGCTCGAAGATGTCGTTGACGAAGCTGTTCATGATC 8358 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| | | | || || || || ||||| |||||||| || || ||||||||| Sbjct 8357 GTCATGGCCCGGCCAGAAATTCCGGTATCAGGGTGAACCTGCTTAAGGACTTTGTAGATG 8298 >seq5380 Length=870010 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||||| ||||| || | |||||| || || ||||| ||||| ||| ||| || |||| Sbjct 558847 TCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTGTTTTTCTTGA 558906 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 | ||||| | |||| | || | ||||| ||||||||||| ||||||||||| Sbjct 558907 GCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAGGCGCCAG 558966 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||||||| || Sbjct 558967 GACGCTTGCCGCCTCC 558982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106666999814018