Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5580 147 2e-30 seq5614 82.4 6e-11 >seq5580 Length=1179668 Score = 147 bits (162), Expect = 2e-30 Identities = 159/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| | | || || ||||||| |||||| ||||| |||||||| || || | ||||| Sbjct 1155014 ATCGAACAGAGTCTGGGCGCCCAACTCGCAGCCGAAATACTTTGTTGGATAGGTTGCCGG 1155073 Query 34497 ACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 ||| |||| || || | ||||| |||||| |||| || || || |||||||| || Sbjct 1155074 ACGGCCAATAGCGCGAGCTACTTCGGCCATGTTAACGAGAACGGTTTTAATGCCGTTCCC 1155133 Query 34557 CTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||| ||||||||||| || ||||| || ||||| |||||||| ||||| ||||| | Sbjct 1155134 CTTGCCTTCGACCTTTGCCTGCAGA--CGTGGCATCTTGTAGCGATAGAAGATGTCCGTC 1155191 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCAT 34643 || ||||||| ||||| || || |||| Sbjct 1155192 ACGCTGCGGTTTACGTTAACGGTGGCCAT 1155220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/175 (72%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 || ||||| ||||| ||| | || | | ||||| || || || | || | ||| Sbjct 1154782 CCACATGCCTTGCAAGACTGGGAAATGGTTTGGTTTTTGGCAGATACAGTCAGATTGGTC 1154841 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 ||||| ||||| ||||| || |||| |||||||||||| ||||| ||||| || || ||| Sbjct 1154842 TCCGGATTGTCGCATTCGGGGCACAGCACAAACTTGCGAATGAAGCCATCCAGTAGATCC 1154901 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 || ||||| ||||| || ||||| || | || |||||| || |||||| Sbjct 1154902 TGCAACTTGTTCACATCGTGCGATCCGTTCACAACAAAGCGTTCG-TTCTGTAAT 1154955 >seq5614 Length=3457230 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || |||||||| |||||||||||||| ||||| ||| | || || || Sbjct 1200470 AATATGCAGATCTTTGTCAAGACTTTAACCGGCAAGACCATCACCTTGGAGGTCGAACCC 1200529 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | || || ||||| ||||| || || | ||| || Sbjct 1200530 TCCGATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGAC 1200589 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | || | ||| || || ||||| ||||| | | || || |||| ||| Sbjct 1200590 CAGCAGCGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCGGACTAC 1200649 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| || ||||| ||||| |||| | | ||||| || || Sbjct 1200650 AACATCCAAAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGTGGTGG 1200699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412812648708722