Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5381 167 4e-35 seq5351 138 2e-26 seq4109 123 4e-22 seq5469 120 5e-21 seq3122 118 2e-20 seq5414 107 3e-17 seq1583 96.9 5e-14 >seq5381 Length=2307182 Score = 167 bits (184), Expect = 4e-35 Identities = 370/545 (68%), Gaps = 10/545 (2%) Strand=Plus/Plus Query 2411460 GTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTT 2411519 |||||||||||| |||||||| | |||||||| | || |||| || ||||| Sbjct 1803693 GTGGATGCGCTTCTCGTAGCCCAACTGCGGCAGGTACTTCTCCGAGAAGGTGAAAATCTT 1803752 Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579 ||||||||| || || |||||||| ||||| | ||||| || |||||| | ||||| Sbjct 1803753 GCGCTGGTCCACGCCACCGAACTGGGCATCGACCTTGAGGTACTCCTCGTCCAAAGCCTG 1803812 Query 2411580 CATGAGCGGG-TAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCTTGACCACCTGGG 2411638 || | |||| || | | | ||| | |||| || ||||||||||| || Sbjct 1803813 CA-GTCCGGGATAAAGCAAACCGGAGAGAAGTGGGTACTCCACCTGCTTGACCACCTCGG 1803871 Query 2411639 CGGCGGCCTTTTGCGC--CGTGCCGACGGTC-ACGCGCGCCGTCAGGCGCAAGAGGTCGA 2411695 | | ||||||| || ||||| | | | ||| | || | || ||| || | Sbjct 1803872 CACCCGCCTTTTTAGCATCGTGCTGCGTGACCACG-GAGCTG--AGCTTGTAGACATCCA 1803928 Query 2411696 GCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAA-TTCGAGACGATCCAGC 2411754 | ||||| | | | ||||| ||||| || || || ||| | | |||||| Sbjct 1803929 GGGTGTACTCCTTGGACAGTTGGTAGTCGCTACCCTTGACGAACTTCAACTTG-TCCAGC 1803987 Query 2411755 GGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGC 2411814 || ||||||||| ||||||||| |||||| | |||||| | || || || Sbjct 1803988 GGAACGCCAATGGAACTGAGCATGGCTTTGATGACCTGCTCGTAGTACTGGGTGCGCAGC 1804047 Query 2411815 TCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGG 2411874 || | || |||||| | ||| ||||| || | |||||||| |||||||| ||| Sbjct 1804048 TCCAACAGAGACCACGGGGCCTTCATGTTGTCCAGATAGGCGTGCAAATCGGCAAACAGG 1804107 Query 2411875 ATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAG 2411934 ||| ||||| ||||| |||| || || ||||| | || | ||||||||||||||| Sbjct 1804108 ATCGTCACCTCGCATCCTGCCTTCAGGAAATCGGCGATCTTTGACATGGGCACAAAGTAG 1804167 Query 2411935 CCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTCGGCC 2411994 | | ||| ||||||||||||| ||| || ||||| ||||| |||| ||||| ||| Sbjct 1804168 GCGACATGTGGCTTGCCCGTCGTCGCTGTTCCCCAGTAAATCTTGAGATCTCGCTCTGCC 1804227 Query 2411995 ATGAT 2411999 | ||| Sbjct 1804228 AGGAT 1804232 >seq5351 Length=991022 Score = 138 bits (152), Expect = 2e-26 Identities = 221/315 (70%), Gaps = 7/315 (2%) Strand=Plus/Plus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 ||||| |||||| ||| || || ||||| ||||| |||||||| ||||| || || Sbjct 257593 GATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAAT 257652 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 || ||| ||||| ||| |||||||| || |||||||||||| ||| || ||||| Sbjct 257653 GGAGGCGAAGCTGCCGCTGAAGAAGATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTC 257712 Query 794475 GGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532 | |||| ||| ||| | |||||| ||| ||||| || ||||| | Sbjct 257713 -CCCGAAGT----TGGCTGACTTGGAGGAGATCCAGGACATGGCCCAGTCAGCCTTGCGC 257767 Query 794533 CTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTG 794592 |||||| |||| ||| ||||||||| || |||| || || | ||| || | Sbjct 257768 TTCACCGCCGGCATCGTTTCGATGGCGTTGAACAGGTACTCTCGCTGGTGCGGATCGCGG 257827 Query 794593 ACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGG 794652 | ||| |||||||| || | ||| |||| ||||| | ||| || |||||||||||| Sbjct 257828 ATGTATGTGTCGATCAGCACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGG 257887 Query 794653 AAGCCATAAAAGCAG 794667 ||||| || |||||| Sbjct 257888 AAGCCGTAGAAGCAG 257902 Score = 111 bits (122), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||| || || || || ||| | ||||| | |||| | |||| || || | Sbjct 422166 GAGAAGCGTACTGATGATATCTCGTCTTGGGATGCCGACTTTCTCAAGGTGGATCAGGGC 422107 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| ||||| | ||||| || ||||||||||| ||||| || ||| || ||| | Sbjct 422106 ACCCTATTTGAACTCATCCTGGCTGCCAACTACCTGAACATCCAGGGCCTGCTGGATGTC 422047 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| ||||||||| | ||||||||||| ||||| ||||||| ||| | || Sbjct 422046 ACCTGCAAGACTGTGGCCAACATGATCAAGGGCAAATCGCCGCAGGACATTCGCGACACA 421987 Query 2035746 TTTAACATCAA 2035756 || |||||| Sbjct 421986 TTCGCCATCAA 421976 Score = 105 bits (116), Expect = 1e-16 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||| || || || || ||| | ||||| | ||| | |||| || || | Sbjct 424932 GAGAAGCGTACTGATGATATCTCGTCTTGGGATGCCGATTTTCTCAAGGTGGATCAGGGC 424873 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| ||||| | ||||| || ||||||||||| ||||| || ||| || ||| | Sbjct 424872 ACCCTATTTGAACTCATCCTGGCTGCCAACTACCTAAACATCCAGGGCCTGCTGGATGTC 424813 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| || ||||||||| | ||||||||||| ||||| ||||||||||| | || Sbjct 424812 ACCTGCAATACTGTGGCCAACATGATCAAGGGCAAATCGCCGCAGGACATCCGCGACACA 424753 Query 2035746 TTTAACATCAA 2035756 || |||||| Sbjct 424752 TTCGCCATCAA 424742 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||| | | || ||||||| ||||||| | |||| |||||| Sbjct 257897 AAGCAGCGGGCCTCTGTGATCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTG 257956 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || ||||| ||| ||| ||||| ||||| | |||||| |||||||| ||||||||| Sbjct 257957 ACAATGCCATCGGAGGCTGCGAAGAAGGCCAACACGTGCGAAATAAAGTGGCGCTCGTCG 258016 Query 796261 TCGCT-GAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 || | |||| | ||||| | | ||| | ||||| |||||||| ||||||| Sbjct 258017 TCCTTCAAGCG-GTGCCAGTCGGTCAGGTCCTTGGACAGGTCCACCTCCTCCACGGTCCA 258075 Query 796320 AAAGGAGGCCTCGGCCT 796336 || |||||||| |||| Sbjct 258076 GAAAGAGGCCTCAGCCT 258092 >seq4109 Length=3375 Score = 123 bits (136), Expect = 4e-22 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| |||||| |||||| || || ||| Sbjct 3348 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGCGTGCTTGGCCAACTCTCCCGGCA 3289 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||| ||||| || || || || || || || || ||||||||| | Sbjct 3288 GGAGCAAGCGTACGGCCGTTTGAATTTCCCGACTGGTAATGGTCGAGCGCTTGTTGTAGT 3229 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||||| | ||||| |||| || || || ||||| ||||| Sbjct 3228 GAGCCAGGCGAGAAGCCTCGGCAGCAATGCGCTCGAAGATATCATTCACAAAGCTGTTCA 3169 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || || || ||| ||||| |||||||| || ||||||| Sbjct 3168 TGATGCTCATCGCCTTCGACGAAATACCAGTGTCAGGGTGGACCTGCTTCAGGACCTTGT 3109 Query 1485710 AAA 1485712 ||| Sbjct 3108 AAA 3106 >seq5469 Length=1487604 Score = 120 bits (132), Expect = 5e-21 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCG--AGGTCGACCAAC 2035623 || |||||||||||||||||| ||||||| | | ||| | ||||||| || Sbjct 449913 GAGAAGCGCACCGACGACATTATCTCGTGGGAT--GCCGATTTCCTGAAGGTCGATCAGG 449856 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 ||| | |||||| | || || || |||||||| || ||||||||| || ||||| Sbjct 449855 GCACTTTGTTTGAGCTCATTCTGGCTGCCAACTATCTGGACATCAAGGGGCTTCTCGAGC 449796 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743 | || ||||| |||||||| | |||||||||||| | || ||||| |||||||||| Sbjct 449795 TTACCTGTAAGACAGTGGCCAATATGATCAAGGGCAAGACTCCGGAGGAAATCCGCAAGA 449736 Query 2035744 CCTTTAACATCAAG 2035757 |||| ||||| ||| Sbjct 449735 CCTTCAACATTAAG 449722 >seq3122 Length=11206 Score = 118 bits (130), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| |||||| |||||| || || ||| Sbjct 9981 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGCGTGCTTGGCCAACTCTCCCGGCA 9922 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||| ||||| || || || || || || || || ||||||||| | Sbjct 9921 GGAGCAAGCGTACGGCCGTTTGAATTTCCCGACTGGTAATGGTCGAGCGCTTGTTGTAGT 9862 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||||| | ||||| |||| || || || ||||| ||||| Sbjct 9861 GAGCCAGGCGAGAAGCCTCGGCAGCAATGCGCTCGAAGATATCATTCACAAAGCTGTTCA 9802 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || || || || ||||| |||||||| || ||||||| Sbjct 9801 TGATGCTCATCGCCTTCGACGAAATTCCAGTATCAGGGTGGACCTGCTTCAGGACCTTGT 9742 Query 1485710 AAA 1485712 ||| Sbjct 9741 AAA 9739 >seq5414 Length=687357 Score = 107 bits (118), Expect = 3e-17 Identities = 142/193 (74%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 429528 GTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTCCAC 429587 || ||||| ||||||||| || ||||| ||| | | ||||| ||||| |||| ||| Sbjct 306735 GTGGAGCGGCACCTGCGCGACGACGACCTGGTGATTTTCAACCGACAGCCCACGCTGCAC 306676 Query 429588 ATGGGGTCGATGCTCAACCACAAGGTG---GTGCCCATGCCC-GGTCGCACCTTCCGGCT 429643 | | | ||| | |||| |||| |||| ||||| ||||| || ||||| | Sbjct 306675 AAGATGAGTATGATGGGGCACAGGGTGAAGGTGC---TGCCCTGGTCG-ACGTTCCGCAT 306620 Query 429644 CAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCA 429703 ||||| || ||| ||||||||||||| || ||||||||||||||||||||||| Sbjct 306619 GAACCTCTCCTGTACGTCGCCCTACAACGCCGATTTCGACGGCGACGAGATGAACCTGCA 306560 Query 429704 CGTGCCCCAGTCG 429716 |||||| |||||| Sbjct 306559 CGTGCCGCAGTCG 306547 Score = 91.5 bits (100), Expect = 2e-12 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 429032 GTCGGGCAAGCCCACCAAGGGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCG 429091 |||||||||||| |||| | | || ||| ||||||||||||||||| ||||||| Sbjct 307078 GTCGGGCAAGCCGCTGAAGGCCATTAAGGCGCGTCTCAAGGGCAAGGAGGGCAGGATCCG 307019 Query 429092 CGGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCC 429151 || || |||||||| || || |||| | || || ||||||||| |||||| || Sbjct 307018 TGGAAACCTTATGGGCAAACGTGTGGACTTCTCTGCCCGTACCGTCATCACTCCCGATCC 306959 Query 429152 CGAAATC--GACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTT 429209 ||||| ||| ||| |||| || ||||| || | | ||| | ||||| Sbjct 306958 --AAATCTGCGCATCGACCAGGTCGGTGTGCCGCGCTCCATTGCCCAGAACTTGACCTTC 306901 Query 429210 CCCGAGCGCGTGACGCCCTTT 429230 ||||||| || ||||||||| Sbjct 306900 CCCGAGCTGGTTACGCCCTTT 306880 >seq1583 Length=11539 Score = 96.9 bits (106), Expect = 5e-14 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| || || || ||||| ||||| ||||||||| | || || || || | | Sbjct 8540 TACTTCGTCACCGCTTTGGTGCCCTCACTCACGGCGTGCTTAGCAAGCTCCCCTGGAAGA 8481 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-G 1485590 | ||||||||||||||||| ||||| || ||| ||| || |||||| || | | Sbjct 8480 AGAAGGCGCACGGCGGTCTGTATCTCACGACTGCTGATGGTAGATTTCTTGTT-GTACTG 8422 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||||| || || || ||| | | || || |||| ||||||||||| || |||||| Sbjct 8421 GGCCAGCCGACCAGCTTCGCCGGCAATCCGCTCGAAGATGTCGTTGACGAAGCTGTTCAT 8362 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||| ||| | | || || || || ||||| |||||||| || || ||||| Sbjct 8361 GATCGTCATGGCCCGGCCAGAAATTCCGGTATCAGGGTGAACCTGCTTAAGGACTTTGTA 8302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915634320776006