Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5380 140 2e-28 seq4595 122 6e-23 seq5614 113 3e-20 seq5446 98.7 6e-16 >seq5380 Length=870010 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||||||||||||||| || || ||| |||| |||| Sbjct 656793 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCATCT 656734 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || ||||| ||| | || | || || ||||| Sbjct 656733 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 656674 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || | ||||| |||| ||| |||||| Sbjct 656673 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTGATGGTC 656614 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 656613 TTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 656582 >seq4595 Length=987418 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||| | ||| ||||||||| ||||| ||||| || | | || | || Sbjct 268511 CAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTC 268570 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 268571 CTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTC 268630 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||| || || || |||| || || ||| || || | ||| ||| Sbjct 268631 CTGAATTTTGGCTTTCAC--ATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATG 268688 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || | |||||| |||||||||||||| Sbjct 268689 GTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 268723 Score = 113 bits (124), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || || || || || ||||| |||| || || ||||| |||||||| Sbjct 267848 CTCCTTCTGGATATTGTAATCAGACAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 267907 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || ||||| ||| | || | ||||||||||| | ||||| || || | Sbjct 267908 GATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTTAC--A 267965 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || | ||| || || | || ||||||||||| || |||||||| Sbjct 267966 TTCTCGATAGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTC 268025 Query 34964 ACAAAGATCTGCATG 34978 || |||||||||||| Sbjct 268026 ACGAAGATCTGCATG 268040 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||| | ||| |||||||| ||||| ||||| || | |||| |||| Sbjct 268055 CAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCATC 268114 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| |||||||| || ||||| ||| | || | ||||||||||| Sbjct 268115 TTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTC 268174 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| || || || || || | || | ||| || || | || ||| Sbjct 268175 CTGGATTTTGGCCTTCAC--ATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATG 268232 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || |||||||| || |||||||||||| Sbjct 268233 GTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATG 268268 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||| | ||| ||||||||| ||||| || || || | |||| |||| Sbjct 267599 CAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATC 267658 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||||||||| || ||||| ||| | || | |||||||| || Sbjct 267659 TTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATC 267718 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || || | || | ||| || || | || ||| Sbjct 267719 TTGAATCTTGGCCTTCAC--ATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATG 267776 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || |||||||| || ||||||||||| Sbjct 267777 GTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 267811 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || || | |||| | || ||||||||||| |||||||| Sbjct 267392 CTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAA 267451 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||| ||| | || | ||||||||||| | ||||| || ||| Sbjct 267452 AATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTT 267511 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || || | || ||||| ||||| || |||||||| || Sbjct 267512 CTCAATAGTGTCCGACGGCTCTACCTCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCAC 267571 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 267572 GAAGATCTGCATG 267584 >seq5614 Length=3457230 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | || |||||| || ||||| |||||||| || |||| | || Sbjct 1200913 CAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTC 1200854 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||||| ||| ||||||||| | || | ||||||||||| Sbjct 1200853 CTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 1200794 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | || || |||||| || | ||| ||| Sbjct 1200793 CTGGATCTTGGCCTTGAC--ATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATG 1200736 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||||| |||||||||||||| Sbjct 1200735 GTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | || |||||| || ||||| |||||||| || |||| | || Sbjct 1200685 CAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTC 1200626 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||||| ||| ||||||||| | || | ||||||||||| Sbjct 1200625 CTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 1200566 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || || ||||| || | ||| ||||| Sbjct 1200565 CTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGT 1200506 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||||| |||||||||||||| Sbjct 1200505 CTTGCCGGTTAAAGTCTTGACAAAGATCTGCAT 1200473 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | || |||||| || ||||| ||||| || || |||| | || Sbjct 1201141 CAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 1201082 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||||| ||| ||||||||| | || | ||||||||||| Sbjct 1201081 CTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 1201022 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | || || |||||| || | ||| ||| Sbjct 1201021 CTGGATCTTGGCCTTGAC--ATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATG 1200964 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||||| |||||||||||||| Sbjct 1200963 GTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 >seq5446 Length=1541693 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1371107 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCC 1371166 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || ||||||||||| || || ||||| ||| | || | |||||||| || Sbjct 1371167 TCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC 1371226 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | || || || | ||| |||| Sbjct 1371227 TGAATCTTGGCCTTCAC--ATTCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGG 1371284 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || ||||| || || ||||| |||||| Sbjct 1371285 TCTTGCCGGTAAGGGTTTTAACGAAGATTTGCATG 1371319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325669960181726