Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5614 89.7 4e-13 seq5446 82.4 6e-11 >seq5614 Length=3457230 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||||| || ||||| ||||| ||| | || ||| | | Sbjct 1200701 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCC 1200760 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||| || || || || | ||| || ||| Sbjct 1200761 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1200820 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | ||| || || ||||| ||||||| || || ||||||||||| Sbjct 1200821 CAGCGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCGGACTACAAC 1200880 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||||||||| ||||| |||| || | |||| || || Sbjct 1200881 ATCCAAAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGTGGTGG 1200927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||||| || ||||| ||||| ||| | || ||| | | Sbjct 1200929 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCC 1200988 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||| || || || || | ||| || ||| Sbjct 1200989 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1201048 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | ||| || || ||||| ||||||| || || | ||||||||| Sbjct 1201049 CAGCGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCCGACTACAAC 1201108 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||||||||| ||||| |||| Sbjct 1201109 ATCCAAAAGGAGTCTACTTTGCATTTGGT 1201137 >seq5446 Length=1541693 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||| | || ||||| ||||||||| | || ||| || Sbjct 1371318 ATGCAAATCTTCGTTAAAACCCTTACCGGCAAGACCATTACCTTGGAGGTGGAACCTTCG 1371259 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| ||||| || || | ||| |||||| Sbjct 1371258 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 1371199 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || |||||||||||||| | || || | ||||||||| Sbjct 1371198 CAGCGTCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACCCTGTCCGACTACAAC 1371139 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 1371138 ATCCAGAAGGAGTCGACCCTCCACTTGGTG 1371109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398848828016506